BAC Information

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BAC

Clone NameMSMg01-064O01
Chromosome10 (Build37)
Map Location 128,859,951 - 128,860,624
singlet/doubletsinglet
Overlap genenone
Upstream geneRnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488
Downstream geneOlfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O01.T7 (MSMg01no064_o01.b1)MSMg01-064O01.TJ (MSMg01no064_o01.g1)
ACCAG290226AG290227
length1,1851,197
length of high quality
(start - end)		673 (93 - 765)89 (176 - 264)
definitionCHROMAT_FILE: MSMg01no064_o01.b1 PHD_FILE: MSMg01no064_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:09 2005CHROMAT_FILE: MSMg01no064_o01.g1 PHD_FILE: MSMg01no064_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCACACCNNNNNTACTCACTGCGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTATATATTAGAAACTACCCATTTATGCTTCAAGTGGCA
GTCACCTGTCACAAGGGCCCCCTTAACATCCCTGATATTCCTAAGGGATA
GGCTGACAGACAGAAGTCCAAAAAACAGTCTTAGAGATTCCTCAAGACTT
ATCAATTTTTCCTCCAAAGATGGATAATATAAAATTAAAGTATGTTCCCC
AAGAGGAAGAACAAGGTAGCAAGCAAAGAAGATAATTAGAAATAATGTAC
TATTGTATCAAGCCCTCTACTGAAAAATAATGAAAGACATACATGTTTCA
TTATTTCGGGTAAAGATGCCAACTTGTAAATAAATAGCTTACTATTCACA
GGACAGCGACTGACTTTATGGTAACACAAGTATGTCAGGCCTTCACTTTA
TATGTACACAACTCTGGCCATCCTCATTTTCTTATGTTCATTGAGCCAAT
CCAGGAAAATGCAAGTTATTCAAGTGGGGACTGTCAAATAAACTTTACTC
ATATGCTTCCTTCTATGTGCCAATTTCAAGTATATTTTGGTGTTTGTAAA
TATCTTCAGTGGCTAGATAGAATTTTCCCCACTAGAACTGAAGGGGACAT
TGAAGTGGCAATGGCCTGGGGCAAATAAGCTTAGTGTTTGGCATCCTTCA
TTCATTCAATAGTGATAACTGACCTTCCTAAATTTCACAGGCAATCCAGT
TTATATCTAGGACCCTATGGATAAAGCATTACCTACATTCTACTTGGCAA
CCCATTANCAAAGTTGAAAAGACCAACAAAACAATTAAACAGATCCTAAC
AAAACATTTGTCAGATAACTGATAAAAATAAAAAACAATTGCCCATCACT
CTTCAGTAAAGTTAAGACACCTCCTAAATCCTACACCAAATTTCTTCCCC
TGTAAATTTGCAGTAATAAAAAACTCCTTACCCCTAAATTTTGGCCATAA
AACTTCTGAAAAACCAAAAAACCCCCCAAAGGGAGTGGGAAACTGTGGCT
TATGGCCCACTCCCGGGGAAAATTGGTGACCTCCCAAAAGGGTGGGGGGT
TTCTTTAGAGACCGGGGGTGTTTCTTAAAACCCTGGGAAAAGGGGGGGCC
AAAAAAAAAAGGGTTTTCAACCGCCTCTCATTTGG

NNTTTAAGATGGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGGATGGCAATAATATGTTTATGGCACA
CTCGGTTTCTGTGAAACAATAAAAGAGACCAAGGGTACATTTATTTTCAT
TTCTAAGGGAGGCTGTTAGCATCTGTACAAGCAATTCACCATATATATTT
TTTTTATGCCAAGGTTTTGAATAACTAAAAAAGGCTAGCGGGACCTGAAT
GACAAAACAATCTTCTGAAGAATATTATGAATATATTTATTTATATGCTT
TTAAGGGGCAAAATTTAAGCAAGGGCTGGCTATGGTATGGAATTATATCT
GAAGGGCATTACCATATATACCAAACAGAATATTTCATATTTGGGAACAA
TTGTTTCTTATCCCTCCCTGAAAGGTTAATTTACGGCAAAAATATAAGGA
TTTTTTTTTCCCCCCCCCCCTATATTTATTACTGTTAAAAAAAAAATGGA
GGATATTTTGACTATCATATAAACCACATAAGAGTTATTTGTCAGTTTTG
AGGGCATATTGATGAAAAATGTATATTCCTAAAGAGAAAAAAACATGGAG
AACTTGAAGACTAAAATATGAAAAGGTGAATGATATCCATGATCAGCTTT
AATACTTATCACTTGCTGAACTGCACAGCACAGAAACCAGTACAAAAAAT
TTGATAACATATCACAGACTCTGGGTTGTCTGTTAAAGGCCAGGAGAGAA
AAGAAGGGATAAAAGTCAAAGAGGTTACAGGGTATAGCTCTGGCGGTTGA
GAAAGAAATTCCAACACAAAATTTTATTCACTCTGAAAATTCTTTGAAAA
CAAAGGCCCTATTTTACCGGGAAATGAAAAAAAAGCCCCTTGAAGGGGTT
TCTTTGAACCCTAAAAAAGTTTAAATTTAAAGGTACCCAATAAACCTTAG
CAAAAAAAAAAATTTTAAAATGGAATTCAAGGGGGCCCACTTCCAGCATT
TTTTAAGAAAAAAAACCATTGGGATTCCCGGAACCTCCGGTTAAAATATT
TTTCCCCCGGGGCCCCGGGGTTTTAATTTTCCCCCCCAAAAAGGAGAGAA
ATTTTTTCTTACAACAAAAACTCCGGCTCCCGATAATTATGTGGTGGTTC
CCAAAAACAACATTTTGTAGCGCCCTTTGTACCCATCTTTAATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o01.b1 MSMg01no064_o01.b1 CHROMAT_FILE:
MSMg01no064_o01.b1 PHD_FILE: MSMg01no064_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:09 2005
         (673 letters)



>mm_chr10_128859751_128860824
          Length = 1074

 Score = 1259 bits (651), Expect = 0.0
 Identities = 669/675 (99%), Gaps = 3/675 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtggcagtcacctgtcacaagggcccccttaacatccctgatattcctaagggatagg 60
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 874 aagtggcagtcacctgtcacaagggcccccagaacatccctgatattcctaagggatagg 815

                                                                       
Query: 61  ctgacagacagaagtccaaaaaacagtcttagagattcctcaagacttatcaatttttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 ctgacagacagaagtccaaaaaacagtcttagagattcctcaagacttatcaatttttcc 755

                                                                       
Query: 121 tccaaagatggataatataaaattaaagtatgttccccaagaggaagaacaaggtagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tccaaagatggataatataaaattaaagtatgttccccaagaggaagaacaaggtagcaa 695

                                                                       
Query: 181 gcaaagaagataattagaaataatgtactattgtatcaagccctctactgaaaaataatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 gcaaagaagataattagaaataatgtactattgtatcaagccctctactgaaaaataatg 635

                                                                       
Query: 241 aaagacatacatgtttcatt-atttcgggtaaagatgccaacttgtaaataaatagctta 299
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 634 aaagacatacatgtttcattca-ttcgggtaaagatgccaacttgtaaataaatagctta 576

                                                                       
Query: 300 ctattcacaggacagcgactgactttatggtaacacaagtatgtcaggccttcactttat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctattcacaggacagcgactgactttatggtaacacaagtatgtcaggccttcactttat 516

                                                                       
Query: 360 atgtacacaactctggccatcctcattttcttatgttcattgagccaatccaggaaaatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 atgtacacaactctggccatcctcattttcttatgttcattgagccaatccaggaaaatg 456

                                                                       
Query: 420 caagttattcaagtggggactgtcaaataaactttactcatatgcttccttctatgtgcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 caagttattcaagtggggactgtcaaataaactttactcatatgcttccttctatgtgcc 396

                                                                       
Query: 480 aatttcaagtatattttggtgtttgtaaatatcttcagtggctagatagaatttt-cccc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 395 aatttcaagtatattttggtgtttgtaaatatcttcagtggctagatagaatttttcccc 336

                                                                       
Query: 539 actagaactgaaggggacattgaagtggcaatggcctggggcaaataagcttagtgtttg 598
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 335 actagaactgaaggggacatcgaagtggcaatggcctggggcaaataagcttagtgtttg 276

                                                                       
Query: 599 gcatccttcattcattcaatagtgataactgaccttcctaaatttcacaggcaatccagt 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gcatccttcattcattcaatagtgataactgaccttcctaaatttcacaggcaatccagt 216

                          
Query: 659 ttatatctaggaccc 673
           |||||||||||||||
Sbjct: 215 ttatatctaggaccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space:   705432
Effective search space used:   705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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