Query= MSMg01no064_o13.b1 MSMg01no064_o13.b1 CHROMAT_FILE:
MSMg01no064_o13.b1 PHD_FILE: MSMg01no064_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:13 2005
(653 letters)
>mm_chr10_111787406_111788458
Length = 1053
Score = 1193 bits (617), Expect = 0.0
Identities = 644/657 (98%), Gaps = 8/657 (1%)
Strand = Plus / Minus
Query: 1 ggcaaaagtgtaaggaaaaaaagaaatgtccttgaatccctgacca----ccccgcactc 56
||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 853 ggcaaaagtgtaaggaaaaaaagaaatgttcttgaatccctgaccataat----gcactc 798
Query: 57 ccagctgcgtgtggatctgataatggtggtagttatgttaatgtgtccctctttcctact 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ccagctgcgtgtggatctgataatggtggtagttatgttaatgtgtccctctttcctact 738
Query: 117 atagggttggtctccattattttaatcacacattttaaaatgtcctacaggaagacccaa 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atagggttggtctccattattttaatcacacattttaaaatgtcctacaggaagacccaa 678
Query: 177 tgtacgattttcttaatattaatgattcttgtaagttctttctacaaaagtaagagctaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgtacgattttcttaatattaatgattcttgtaagttctttctacaaaagtaagagctaa 618
Query: 237 atgaatgtaagctcatagccagagttcaaggattaaatggactaagtttgagtgaattag 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atgaatgtaagctcatagccagagttcaaggattaaatggactaagtttgagtgaattag 558
Query: 297 gacagaaaaaataaatgacaccaactattaattaatagggaggacagttactgcattccc 356
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 557 gacagaaaaaataaatgacaccaacaagtaattaatagggaggacagttactgcattccc 498
Query: 357 aggaatcttcatgatgaaatgtccctgcacaagtctttcatgttattgtatgaaaaaagc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aggaatcttcatgatgaaatgtccctgcacaagtctttcatgttattgtatgaaaaaagc 438
Query: 417 tttatagtcaatgcaattttaaggacaataaggaaagtttgggaatcatacatatagtca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tttatagtcaatgcaattttaaggacaataaggaaagtttgggaatcatacatatagtca 378
Query: 477 gctgaaattccgttcctgtctgatcacattccagtaaccactgtttatcaccatgaaaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gctgaaattccgttcctgtctgatcacattccagtaaccactgtttatcaccatgaaaca 318
Query: 537 gcacagatctcttcaccctggttttggataaaatgaggacaataacctctgcctgaatct 596
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 317 gcacagatctcttcaccctggttttggataaaatgagggcaataacctctgcctgaatct 258
Query: 597 ttatatgcataaagcatataactataacagggaggggccatgagacatacatgaatg 653
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttatatgcataaagcataaaactataacagggaggggccatgagacatacatgaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no064_o13.g1 MSMg01no064_o13.g1 CHROMAT_FILE:
MSMg01no064_o13.g1 PHD_FILE: MSMg01no064_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:13 2005
(379 letters)
>mm_chr10_111634430_111635210
Length = 781
Score = 600 bits (310), Expect = e-176
Identities = 363/382 (95%), Gaps = 4/382 (1%)
Strand = Plus / Plus
Query: 1 aatgtgtagaacggtttgaagagcaggtgtgtaagccatggattcgatggatattacccc 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aatgtgtagagtggtttgaagagcaggtgtgtaagccatggattcgatggatattaacct 260
Query: 61 aggggagaactca---tgtattgagaagcaagtgtcaatggctccaaaggtagttagagg 117
||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aggagagaactcatggtgtattgagaagcaagcatcaatggctccaaaggtagttagagg 320
Query: 118 acaggtcttcaggagatgcagtcactgatgtgatgatggattcaggatgcagtaaagggg 177
| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 321 ataggtcttcaggagatgcagtcactgatgtgatgatggtttcaggatggagtaaagggg 380
Query: 178 gaggacactctagacatcttaatcttgtgttagttaatccatgcctgtgacattcctatt 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gaggacactctagacatcttaatcttgtgttagctaatccatgcctgtgacattcctatt 440
Query: 238 tgactcttgatgtctagaggaagtcaactccgcctccttttgtgcagtttgaagataaca 297
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 441 tgactcttgatgtctagaggaagtcaactc-gcctccttttgtgcagttcgaagataaca 499
Query: 298 ggcttactttctattgaaggtgacagtcaataccttttctgagctgctgctgttgcacct 357
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 500 ggcttactttctattgaaggtgacagtcagtaccagttctgagctgctgctgttgcacct 559
Query: 358 cggtgtagttgctgatctgctc 379
||||||||||||||||||||||
Sbjct: 560 cggtgtagttgctgatctgctc 581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 781
Length adjustment: 9
Effective length of query: 370
Effective length of database: 772
Effective search space: 285640
Effective search space used: 285640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
