BAC Information

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BAC

Clone NameMSMg01-065C14
Chromosome10 (Build37)
Map Location 83,482,788 - 83,482,920
singlet/doubletsinglet
Overlap genenone
Upstream geneChst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
Downstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C14.T7 (MSMg01no065_c14.b1)MSMg01-065C14.TJ (MSMg01no065_c14.g1)
ACCAG290437AG290438
length706679
length of high quality
(start - end)
75 (77 - 151)134 (74 - 207)
definitionCHROMAT_FILE: MSMg01no065_c14.b1 PHD_FILE: MSMg01no065_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:35 2005CHROMAT_FILE: MSMg01no065_c14.g1 PHD_FILE: MSMg01no065_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTAGGTTATCCCTGCACTCCTGTATCCAGAGACAGCTATT
TCAATGTGTGTTCAGGCCATCCCTTTATTCTCCTCACGCGACAAACATAA
GTCACTCGGGCAAGAGCCCACTTGGTCTTTGGTGGAGTTTGGTCTCTAGT
CCCACAGTGTCCCAGAGTAGTCAGGGAGTTTCCTAACATTCTTCAGGGAA
GTTGTCACTTCCAGCCCTGCCCTGTATTGCATTCCCTTACTGAGCCAGAT
GTTAGGGAACTGATCTCATTGAATTTCCTCAAGATCATACTGTGTGTTGC
ACAGCACGGCTCAAGCTTGACGAGTCCCATAACACTGACTGTCTCAACAC
ACAATTTCCCCAGCTGACTCCCAATTTTTCTATTATACCTGCACATATTA
CCGATTTGAGCATTGTCGCAGCCTTTTTTATATCCCCTGTTTTTACTCTT
TCTCAAGAATCGTATGTTTAGGTCAACACTTGCCTTATTAGTTCCGTATA
TGCTTTCTGTTTCCTGCTGTTTTACCCGCCTTTCTTTTATTTTTTTTTTT
TCACCGACCCTGTCCCCCTTTTTTCCTCGCCTCAGAATTACTTTACACTG
GTCGACTTGGTTCGTGTTTTTTTCTCTTTCCTACTATAAATTTCCCTTTC
CGCCCC
CCTTGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCATTCTAACAGTTGCTTTAGGGGGTT
ATTCTGATGCCAATGTCCCCTAGACGCCATTTGGAGGAATTCTGTATTAA
TGAGAACTTCAATTTCAGTAGGGGAGACTCTCATCCTGGATGTCAGCTCA
GTCTACAGCGGCAGAGAGTTCATGAAGGGCTGTAGTGACTCAGACTTGAC
CTTGACCTCTGTTCATTTCAGAGCTGTGTTCCTAGTTCAGGGCAGTCCAA
CTCAGGAAGTCCGCCTGTTGACGTGTCTTGAGGGTGGCAAAATCTTTTCC
CTGATACGATATCTCAACGTTATGGGTTCACTGAATATCCGGTAGCCCTA
TAAAAGTCGTACTCACTGTTCTAACAGCATTGCATTTTATGTCCATTGTT
AGATCCTTCCTAGGTCTTGTGTAGGACTTCACGGTGTCTTATGTGGGTTG
CTGCCATGAGTCAAATAGAGCAGACTTCTCTATTTTAGGTGGTAGCAGAT
TGTGGTCAGTAAAAGCTCTTGTTGCTAGATTTTGCGGATACTCCAACTGT
TGAGCGTACCGCTCTTCTTGTTCTTCATTAATGTATGTGGGTATGAGTTT
TCATTCCTGCTGGTTTGTAATTATGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c14.g1 MSMg01no065_c14.g1 CHROMAT_FILE:
MSMg01no065_c14.g1 PHD_FILE: MSMg01no065_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:35 2005
         (134 letters)



>mm_chr10_83482587_83483120
          Length = 534

 Score =  219 bits (113), Expect = 7e-62
 Identities = 128/133 (96%)
 Strand = Plus / Plus

                                                                       
Query: 2   cattctaacagttgctttagggggttattctgatgccaatgtcccctagacgccatttgg 61
           ||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct: 202 cattctaacagttgctttaggaggttattctgatgctaatgtcccctacacgccatttgg 261

                                                                       
Query: 62  aggaattctgtattaatgagaacttcaatttcagtaggggagactctcatcctggatgtc 121
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aggaaccctgtattaatgagaacttcaatttcagtaggggagactctcatcctggatgtc 321

                        
Query: 122 agctcagtctaca 134
           |||||||||||||
Sbjct: 322 agctcagtctaca 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)