BAC Information

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BAC

Clone NameMSMg01-065D14
Chromosome10 (Build37)
Map Location 122,163,067 - 122,163,433
singlet/doubletsinglet
Overlap genePpm1h
Upstream geneBC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
Downstream geneD630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065D14.T7 (MSMg01no065_d14.b1)MSMg01-065D14.TJ (MSMg01no065_d14.g1)
ACCAG290485AG290486
length681678
length of high quality
(start - end)
438 (65 - 502)334 (63 - 396)
definitionCHROMAT_FILE: MSMg01no065_d14.b1 PHD_FILE: MSMg01no065_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:40 2005CHROMAT_FILE: MSMg01no065_d14.g1 PHD_FILE: MSMg01no065_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAATTTGCGGCGCTATACGACTCCTATTGCGAGAGAAGCGCGGAATTCC
AAAACTTTCGCCGTAGACTTTCGACCCTGCAGACAGCACTGTTGAGAGAA
GAAGTTACAGACTGGCCGGAAGTGTCTTCCAAGGTTGCATCTGGGAAATG
ACTTAACCAACAGATCTATATCTCTATCTATCTCTATATAAAGAACCCCT
AAGATCCAACAATATCAAAACAACCCGAGTAAAACAAGACAAAGACCTTC
ATATTCAATTTACTAGAAAAGTCACTGAGGTGATGAGAAGCATAAAGGGT
AATGTCCCACATTATAGGACTCCAGGGAAACACAATCACACCCATTAAAT
GGTGCAAAGCCAGAGAACTGACATACCAACCCCAGAGTGACTGTGGCTTA
CAGACCGACATCTGTAACACACTGGAAACAAAACTGAAGTCATCTCTTGG
ACAGGTGGCCTGGCTTCTTGCAAAACTAAACACATCACTGTGCTGTGTAA
GAGCTGTGGTCTTTGTTATTTACCAACAGAACTGAAGACTCACAGCAGCC
CCCAAACTCCTGTCCATAGGTATTTAGAGCAGCTTTACTCTTAATTGTTG
GCCTGGAAGCAGAAAAATACCCTGCAGAAGAACAGAATAAATATCTACCA
GGTAGATCAATACTGTGTTATCTAAGAAATG
ATGACAGGGGAGCCTGGCGGCGCCTGTTCACAAATGGAGGTGAACTATAG
ATTACCCGCGGAATTCTCCTCTGAAGAAAAGACTTGGAGGAGGAAGCAGC
TCATTATGAGAGAAAAGGGTACCAGCCAGATAAAATGCTAGCTAATCAGT
TAAGGAAAAAGCCAAAAGCGGCTGGCGAAGACCAGCATGCTGCTCAGCCT
CCGGGCAGTCGGCTTCAAGGTCATAGTGCACTTCCGCCCTATGCGGAGCC
CCCGCCCTGCGTAGTGCGTCAGCCCTGCGCAGAGAGGCAATGCGCAGACT
CCTTCTTTCCTAAGGAGGAACAAAGGAAAATGCAACAGGCATTTCCGGTC
TTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATATGTGCA
GATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGGAACCAATGCTAATT
TTACCTTGGTGCAGTTAGACAGTCTTGCTGGCATGGCACTAACTCCTGCC
GACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGCAAATATAT
GGAATGGATAGCTCTATGGCAAGAGGCTGCACAAGTGTATGCCCGAACAA
AAGCTGCTGCTTTGACTCCAGAGTATAGATATTGGACTTTTGATCTTTGT
TACGGGTCTTGGAGCTTATACTGCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_d14.b1 MSMg01no065_d14.b1 CHROMAT_FILE:
MSMg01no065_d14.b1 PHD_FILE: MSMg01no065_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:40 2005
         (438 letters)



>mm_chr10_122162596_122163433
          Length = 838

 Score =  671 bits (347), Expect = 0.0
 Identities = 362/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 72  tgcatctgggaaatgacttaaccaacagatctatatctctatctatctctatataaagaa 131
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 838 tgcatctgggaaatgacttaaccaatagatctatatctctatctatctctatataaagaa 779

                                                                       
Query: 132 cccctaagatccaacaatatcaaaacaacccgagtaaaacaagacaaagaccttcatatt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 cccctaagatccaacaatatcaaaacaacccgagtaaaacaagacaaagaccttcatatt 719

                                                                       
Query: 192 caatttactagaaaagtcactgaggtgatgagaagcataaagggtaatgtcccacattat 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 718 caatttactagaaaagtcactgaggtgatgagaagcataaagggtaatgtcccacatcat 659

                                                                       
Query: 252 aggactccagggaaacacaatcacacccattaaatggtgcaaagccagagaactgacata 311
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aggacgccagggaaacacaatcacacccattaaatggtgcaaagccagagaactgacata 599

                                                                       
Query: 312 ccaaccccagagtgactgtggcttacagaccgacatctgtaacacactggaaacaaaact 371
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tcaaccccagagtgactgtggcttacagaccgacatctgtaacacactggaaacaaaact 539

                                                                       
Query: 372 gaagtcatctcttggacaggtggcctggcttcttgcaaaactaaacacatcactgtgctg 431
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 538 gaagtcatctcttggacaggtggcctggcttcttgcaaaactaaacacgtcactgtgctg 479

                  
Query: 432 tgtaaga 438
           |||||||
Sbjct: 478 tgtaaga 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)