Query= MSMg01no065_e08.b1 MSMg01no065_e08.b1 CHROMAT_FILE:
MSMg01no065_e08.b1 PHD_FILE: MSMg01no065_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:43 2005
(486 letters)
>mm_chr10_46083229_46084113
Length = 885
Score = 710 bits (367), Expect = 0.0
Identities = 454/483 (93%), Gaps = 5/483 (1%)
Strand = Plus / Plus
Query: 6 gaattctgtaggctggcaagtctataatcaatacacttactctattaagtatcttataga 65
||||||| |||||||| ||||| |||||||| |||| || | |||||||| |||||||||
Sbjct: 206 gaattctataggctgggaagtcaataatcaagacac-tagtatattaagtgtcttataga 264
Query: 66 ggcttatgtgtttctgattccaatatggtacaacattgcttgagtctaacatagaaacaa 125
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 ggcttatgtgcttctgattccaatatggtataacattgcttgagtctaacatagaaacaa 324
Query: 126 agctgtaatatccaggtgactctctaaagaccctctataaagaccttgac-ttcattttt 184
||||||||||||||||||||||| |||||||||||||||||||||||| | |||| ||||
Sbjct: 325 agctgtaatatccaggtgactctataaagaccctctataaagaccttg-ctttca-tttt 382
Query: 185 ctcattcct-aggttggagaactcatggtctaaataacttaaagtttacttaatactacc 243
||||||||| ||||||||||| |||||| ||||| || ||||| ||||||||||||||||
Sbjct: 383 ctcattcctaaggttggagaattcatggcctaaacaatttaaaatttacttaatactacc 442
Query: 244 acaaactttgtgccttaggttcctccatgtaagagtttgagaaatacacatattgggtct 303
| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 443 ataaagtttgtgccttaggttcctccatgtaagagtttgagaaatacacacattgggtct 502
Query: 304 gtacatttctctaaggcctaagctgggtgactgttttcaataaagattgtaagatgggca 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 503 gtacatttctctaaggcctaagctgggtgactgttttcaataaagattgtaagatgtgca 562
Query: 364 attctaatacattggaacctgtaaacagcatcatttgtaaacatagccacctaattcttc 423
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 attctaatacactggaacctgtaaacagcatcatttttaaacatagccacctaattcttc 622
Query: 424 tataatctttaagattgagaaatataaatatcagagcagagaagaaaatataatcctgaa 483
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 tataatctttaagattaaggaatataaatatcagagcagagaagaaaatctaatcctgaa 682
Query: 484 aga 486
|||
Sbjct: 683 aga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_e08.g1 MSMg01no065_e08.g1 CHROMAT_FILE:
MSMg01no065_e08.g1 PHD_FILE: MSMg01no065_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:43 2005
(519 letters)
>mm_chr10_46233687_46234605
Length = 919
Score = 913 bits (472), Expect = 0.0
Identities = 484/488 (99%)
Strand = Plus / Minus
Query: 32 taaaagaatgaagatagggctagtagatgactcagaggaaaagatgtttgctgccagttc 91
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 taaaagaatgaagatagggctagtagatgactcagaggaaaagatgtttgctgccagttc 860
Query: 92 tgcccacctaagcttgttttctataacgtacatgatagaaagagaaaagcaattcacaca 151
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 tgcccacctgagcttgttttctataacgtacatgatagaaagagaaaagcaattcacaca 800
Query: 152 agttgtcctccaacctccacattttcatcacatgtgctcacacacataaataaaaaatta 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 agttgtcctccaacctccacattttcatcacatgtgctcacacacataaataaaaaatta 740
Query: 212 tttaataaaactaaaattaacgaagatgaaaagtagagtttgcccctattgcaactgtac 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tttaataaaactaaaattaacgaagatgaaaagtagagtttgcccctattgcaactgtac 680
Query: 272 attactagtatatttcaaaatcaacttatatcacgtaatgtgaaacaacactgcatggga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 attactagtatatttcaaaatcaacttatatcacgtaatgtgaaacaacactgcatggga 620
Query: 332 gaataaatatattaggaaaatctcaaatgcagattcatattatcaagatcaaatatgtgt 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gaataaatatattaggaaaatctcaaatgcagattcatattatcaagatcaaatatgtgt 560
Query: 392 acaatcaagcttggaaagaaatatgacatctacattttagttttctaatttccgctggat 451
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct: 559 acaatcaagcttggaaagaaatatgacatgtgcagtttagttttctaatttccgctggat 500
Query: 452 taacttttacatggtaacagaagataaaggcataaatatttaatcctttgtatgcttatg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 taacttttacatggtaacagaagataaaggcataaatatttaatcctttgtatgcttatg 440
Query: 512 gttaacta 519
||||||||
Sbjct: 439 gttaacta 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space: 462681
Effective search space used: 462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
