BAC Information

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BAC

Clone NameMSMg01-065E22
Chromosome10 (Build37)
Map Location 72,084,840 - 72,085,356
singlet/doubletsinglet
Overlap genenone
Upstream geneEG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
Downstream geneZwint, LOC432471, LOC544705, LOC100039981
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065E22.T7 (MSMg01no065_e22.b1)MSMg01-065E22.TJ (MSMg01no065_e22.g1)
ACCAG290549AG290550
length689689
length of high quality
(start - end)
37 (448 - 484)516 (74 - 589)
definitionCHROMAT_FILE: MSMg01no065_e22.b1 PHD_FILE: MSMg01no065_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:46 2005CHROMAT_FILE: MSMg01no065_e22.g1 PHD_FILE: MSMg01no065_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAAAATTTGCGGCGCTAAACGACTCCTATAGTTCGAGAATACGCGGAA
TTCCTGTTCCTTTTCTTTTAATTTTTTCTTTTACCCTCAACTTACAGTAT
AATTCAAGTGCATCTACAGGGGTTCGGCTCTGTAAAAAATGTCACATTCT
CAAGTACCAAAGGGCCTAGCCCCTGCATATATTTGCAAAGCACATAATAC
ATTACTCATTACGGTTATACCATGAGCTGCCAGTCTGGGCACTGGGGCCA
CAGAATTATTGGCAGAGTCTCTGTGGCATACCCATTGTGCTGTCGACAGG
TTCTGTACATTGGGCGACCTATTCCCATCTCTTGGTGTTGTGGAGACACT
GGGGCTTTACTCGGATATTTGGGTGGATCAGCATTTATTGATGGACCCAA
AAAGTCCTGTAGGGCCCAATCCCTTTACAAATCACCATTTGGGCCTATAC
AGCTGCTTCTTGGGAGCTTCTCTGGAAATTCGAGACTCCCAGGCTTCTGA
AACTCCCGCCTCTGCCCCTCTAACGCGGTGAGGCTGGGATGCTCCACTGA
TATTGGAAGCCTTTCCCACACGTCGGGTGGTGGCGCTTGAATACGCGCAA
TGTCTTATGTTTCTATTCGGCGCGGGATTGGGGGCTTTGCCGTGGGGATG
CCGGATGGCTTTGGCGCATGAATGGTTTTCTTCCAGGAN
GCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGATGTAGGGTGCCATTTGTGGTATC
CTTATTTCCTTACTTGTAGAAATAGAACCAGATATTCAGAGGAAGAGAAA
AATAATTTGTGACTTCCTTGAATTCCTTTTAAGGGGGGTGGGCTTTAACT
GAAGCCTGAGTGAAAAGAAAGTGGGGACACTTTTGGGGACAAATGACAAC
AGATTTTATTGATCCCATTTCAAACCTGTTATTACCAAAACTCTGCTTGT
TTGCTGCTTGTGGAACATGGCTGTCCTTTATCTGTTATGCACAAAAGAGG
TCACAAATGCATATCCTGGGTACATGGTGATGCCATACTGTGCCAGAGAC
AAACTGGTCACAGTTATCTTTGTCCTCAATGGGAAAATTCTGTCCTCGTT
CTAACACACATTATCAGACCCTTGACCAAGGAGAAAACTTGATATGAGAC
AGAGAAGACAGCCCAAATGACCTTCAGGCAACAGTTGCCTGCTCCTCTTT
TCTTGGTTTCCCCACCAATTAAACTTCGGGCTATGAGAGCTCTTTCGCTA
CATGTCAGGTATCTGGAATCCCTAGGATAAATGGTCTATCGTGGCCTGAT
GTGATCCTAGAAAAATAAAGAGAGATGTGGTATGTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_e22.g1 MSMg01no065_e22.g1 CHROMAT_FILE:
MSMg01no065_e22.g1 PHD_FILE: MSMg01no065_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:46 2005
         (516 letters)



>mm_chr10_72084640_72085556
          Length = 917

 Score =  953 bits (493), Expect = 0.0
 Identities = 511/517 (98%), Gaps = 1/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatgtagggtgccatttgtggtatccttatttccttacttgtagaaatagaaccagat 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatgtagggtgccatttgtggtttccttatttccttacttgtagaaatagaaccagat 260

                                                                       
Query: 61  attcagaggaagagaaaaataatttgtgacttccttgaattccttttaaggggggtgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcagaggaagagaaaaataatttgtgacttccttgaattccttttaaggggggtgggc 320

                                                                       
Query: 121 tttaactgaagcctgagtgaaaagaaagtggggacacttttggggacaaatgacaacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaactgaagcctgagtgaaaagaaagtggggacacttttggggacaaatgacaacaga 380

                                                                       
Query: 181 ttttattgatcccatttcaaacctgttattaccaaaactctgcttgtttgctgcttgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttattgatcccatttcaaacctgttattaccaaaactctgcttgtttgctgcttgtgg 440

                                                                       
Query: 241 aacatggctgtcctttatctgttatgcacaaaagaggtcacaaatgcatatcctgggtac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatggctgtcctttatctgttatgcacaaaagaggtcacaaatgcatatcctgggtac 500

                                                                       
Query: 301 atggtgatgccatactgtgccagagacaaactggtcacagttatctttgtcctcaatggg 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggtgatgccatcctgtgccagagacaaactggtcacagttatctttgtcctcaatggg 560

                                                                       
Query: 361 aaaattctgtcctcgttctaacacacattatcagacccttgaccaaggagaaaacttgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 aaaattctgtcctcgttctaacacacattatcagacccttgaccaagcagaaaacttgat 620

                                                                       
Query: 421 atgagacagagaagacagcccaaatgaccttcaggcaacagttgcctgctcctcttttct 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 atgagacagagaagacagcccaaatgaccttcagtcaacagttgcctgctcctcttttct 680

                                                
Query: 481 tggtttccccaccaattaaa-cttcgggctatgagag 516
           |||||||||||||||||||| |||||| |||||||||
Sbjct: 681 tggtttccccaccaattaaaacttcggtctatgagag 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space:   458942
Effective search space used:   458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)