BAC Information

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BAC

Clone NameMSMg01-066K05
Chromosome10 (Build37)
Map Location 112,574,249 - 112,574,346
singlet/doubletsinglet
Overlap genenone
Upstream geneGlipr1l3, Caps2, Kcnc2, LOC100042639, 4921506J03Rik
Downstream geneLOC100042655, LOC100042666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066K05.T7 (MSMg01no066_k05.b1)MSMg01-066K05.TJ (MSMg01no066_k05.g1)
ACCAG291563AG291564
length8681,085
length of high quality
(start - end)
100 (77 - 176)---
definitionCHROMAT_FILE: MSMg01no066_k05.b1 PHD_FILE: MSMg01no066_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:30 2005CHROMAT_FILE: MSMg01no066_k05.g1 PHD_FILE: MSMg01no066_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATAACGCG
GAATTCAAACATTTGATTCTATGAAAGAACAATTCTATTCAAAAATGACA
GCATTGTTTAAAAAAAAAATCATAGGATCATTCATTTATTCCATAGTATT
TTACCAGCCACTTGATGAAGTATGACAATTGAGATAGGTTTCCAAACAAT
TTCCTCTGATCATAAAAGCCACAAATAGCATACCTATCTGCTTCTGAATT
TAATAAAGAGTTTCTTTATTCTTGCTTTCCAAATACCTAGCCACACTGTT
GATGAAACAATGAATTTAATCTCTAGATATTTTAAAAGTTATGAAAAATT
TTGTTATTCTTAAGACTATGAGATCTAGACTGAAACTGAACTATCGAGTT
TTCTTGAATAATACATAGACTCCACTATAGTAAATTATAGCTCTCTTAAT
ATTATATCTCTACTTCACAACCAACACCTCCCAATATTAGGATCTTCTAG
AGCTTTTATCTCTATTGTATTTAATATCCATCCAGATTAGTGTTTTTTTT
GTCTTATGTCTATAATAAGTCTTCTCCATCCCTTCTCTCTTTGATTATAT
TATATATATCACTATATTTACTATCCTACCTTCTTACAACAAGAATACTT
ACACAACTTTATTATCTTCTAATATTTTTAATAAAAATAAATTGCAATAT
TACTATAAATATATTATTATATTCTTTTATTTATTATCTCCTCAGAAGCG
ATCGTAATTATATTGTNTACCGTTATTATATAACTATAAGCAAATCCCTT
ACAGAATAATCGTAAATTAATATATTTTATGTACATTCCTCTCCTATCTA
AAATAAATAATTCACATG
CCAATGATAGNTGTAGTAGGCCTCGCCGCGCAGCATAGACCAGATGCANC
TACCCAAGAGACACNNAAGAGAGAGAGATCTTTCCACAATAAAATATGGT
AGTTNGNTGACTCGTATTGTAGATCTCACACCCCTCTGGCCAGTCTCGTC
GCTCAGCACCAACATACTACATGTATCGGGATCAAGGATTAAGTTTGCGC
CTATGTTAATACACTATCCCTAACACTAGTAGATTATTCGTAGCGTTGTT
GTTGCAGCGTCGCAGTCGTGATGTTGTTGTTGTAGTAGCTAATAATTAAT
TTATCTACGCAATCTCCTCACATATATGATACTATAATCATCTATATATC
CAGCTATATATTACCTAACTCATTACATCTTAAAAAAATTATACAATTAT
ATATTGCGTATATAAGATAGCGGTCTTCCTCAAACTATTTTTTTTGTTTT
NTTGATGTTCTTTTACTCTTTACTTTGTTTGTTGTGTTCTCTATCTCTGT
TATTTTTTTTCTCTTTGTTCTCGATGTCACTCTAAGAAACTTAGATTCTC
TTAACAATCTTATACTTACATACTTCTCACTGTTATTGAAGATATATACA
CATACATCATACTACAATCTTGGTTCTATGGCCACATACACCTCACACAA
AACCGACACCGGTATATATTCATATAAGCCATATAATCGTATAACCACTC
TACCGAACATATCACAATATCTACTCAAACTACCTCTGTACTAATATAAC
AGACTACTCACGCTTAAATATCTCAATATATTTATCTAATTCCAAGTAAT
CAGATTTATATTTATTGAACTTCTTCCATTCCGCTCCACTTCATTCTCTC
TTCTTTACCACTACTATACATGACAAAACATACACATCTTGTTAAATAAT
ATAACATAACAACTATATGTATTACATCGTCTATAACATAAGTTCTATCT
CACGAATCGTTATCGCTACACGATACTNATGAGCTTTCTGTTCTTATTTC
AACTCAGTTCCTCTCCGTACCTCCACTCCATCCATACCTATAATATATAT
ACCCCACCGCAATCCTGCTCTCTCACACTCACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_k05.b1 MSMg01no066_k05.b1 CHROMAT_FILE:
MSMg01no066_k05.b1 PHD_FILE: MSMg01no066_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:30 2005
         (100 letters)



>mm_chr10_112574049_112574546
          Length = 498

 Score =  170 bits (88), Expect = 2e-47
 Identities = 97/100 (97%), Gaps = 2/100 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaacaattctattcaaaaatgacagcattgtttaaaaaaaaaatcataggatcattcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaacaattctattcaaaaatgacagcattgtttaaaaaaaaaatcataggatcattcatt 260

                                                   
Query: 61  tattccatagtattttaccagccacttgatgaagtatgac 100
           |||||||||||||||| || |||||||| |||||||||||
Sbjct: 261 tattccatagtatttt-cctgccacttg-tgaagtatgac 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 498
Length adjustment: 8
Effective length of query: 92
Effective length of database: 490
Effective search space:    45080
Effective search space used:    45080
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)