Query= MSMg01no067_b15.b1 MSMg01no067_b15.b1 CHROMAT_FILE:
MSMg01no067_b15.b1 PHD_FILE: MSMg01no067_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:07 2005
(548 letters)
>mm_chr10_51383161_51384109
Length = 949
Score = 940 bits (486), Expect = 0.0
Identities = 531/546 (97%), Gaps = 3/546 (0%)
Strand = Plus / Plus
Query: 5 gaattctgaatactggacaggctcattaaaatatgaagaaaacagccaaattgtaagttc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattctgaatactggataggctcattaaaatatgaagaaaacagccaaattataagttc 264
Query: 65 aattaaccaaaacaacatgcaaactgtacaaaactttaatttatctgtggttatttttt- 123
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattaaccaaaacaatatgcaaactgtacaaaactttaatttatctgtggttattttttt 324
Query: 124 ctttaaacagggtttccatccacagacctgacattcacgtgggtcaaaatggggccccaa 183
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 325 ctttaaacagggtttccatccacagacctgacattcatgtgggtcaaaatggggtcccaa 384
Query: 184 gtccggcctgc-agcaggactagggtcactcctgaaggctgatgcgggagatttgactgc 242
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtctggcctgcca-caggactagggtcactcctgaaggctgatgcgggagatttgactgc 443
Query: 243 acctaggaccccttgtctccactggagggctttgagaagcagcaggaccccactccaggg 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctaggaccccttgtctccactggagggctttgagaagcagcaggaccccactccaggg 503
Query: 303 gcggggaaaggtgtagtctgaggtccctgcagaactgccaggaactggcttaggggtccc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcggggaaaggtgtagtctgaggtccctgcagaactgccaggaactggcttaggggtccc 563
Query: 363 ggctggcatggaggcagagacccgcatgttctcacttttggatactacagatgctgctga 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggctggcatggaggcagagacccgcatgttctcacttttggatactacagatgctgctga 623
Query: 423 gtgctgtagaaaagctgagaacagagtgtgggcctccgggtagacatttattgtataaag 482
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 624 gtgctgtagaaaagctgagaacagagtgtgggcctccgggcaggcatttattgtagaaag 683
Query: 483 gcagagagagggagaatagagaagtaaggctggccatggccacgtggagagagggagaag 542
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 684 gcagagagagggagaatagagaagtaaggctggccatggccacatggagagatggagaag 743
Query: 543 tgggta 548
||||||
Sbjct: 744 tgggta 749
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space: 505182
Effective search space used: 505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no067_b15.g1 MSMg01no067_b15.g1 CHROMAT_FILE:
MSMg01no067_b15.g1 PHD_FILE: MSMg01no067_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:07 2005
(559 letters)
>mm_chr10_51454871_51455831
Length = 961
Score = 949 bits (491), Expect = 0.0
Identities = 543/561 (96%), Gaps = 2/561 (0%)
Strand = Plus / Minus
Query: 1 acttctgtgtcattgaagagatgagtctgggactttggaaagctgtttttctttgggttt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 acttctgtgccattgaagagatgagtctgggactttggaaagctgtttttctttgggttt 702
Query: 61 ggccgtgccttactgatgcaatttgttccctactgcagccttgcttactctcaactgaaa 120
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 701 ggccatgccttactgatgcaatttgctccctactgcagccttgcttactctcaactgaat 642
Query: 121 taaacccaggacaagtttcacgggcatcacactgggtcacagcaactatcttggagagga 180
||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 641 taaacccaggacaagcttcgtgggcatcacactgggtcacagcaactagcttggagagga 582
Query: 181 gccagttaggaattaccactcagttcccagctactttgcccttgtacttcacagagg--g 238
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 581 gccagttaggaattaccactcagttcccagccgctttgcccttgtacttcacagaggatg 522
Query: 239 gccacatgttagaaacacagctgtgccaggagctatttcttcttctggagttaaagaggc 298
|||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 521 gccacatgttcgaaacacagctgtgccaggagctatttcttcttctggggggaaagaggc 462
Query: 299 tttctctgatggtctataatctccaggcaggtgactactcagcttcccctgaaatcacag 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tttctttgatggtctataatctccaggcaggtgactactcagcttcccctgaaatcacag 402
Query: 359 caagtaccactttcatgtatactctctagactcttttaacagtttcctcaaacaacagga 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 401 caagtaccactttcatgtatactctctagactcttttaacagtttcctcaaacaacagaa 342
Query: 419 attcaaaatggctgttttgaattgtataggcgtctgtataatgaataataaatgaaaaac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 attcaaaatggctgttttgaattgtataggcgtctgtataatgaataataaatgaaaaac 282
Query: 479 agcattatgtgtcaaattgcacaaatatatcaccctatacacaaatacaaaagctagagg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agcattatgtgtcaaattgcacaaatatatcaccctatacacaaatacaaaagctagagg 222
Query: 539 acttgccactttgtaacctga 559
|||||||||||||||||||||
Sbjct: 221 acttgccactttgtaacctga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 961
Length adjustment: 10
Effective length of query: 549
Effective length of database: 951
Effective search space: 522099
Effective search space used: 522099
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
