BAC Information

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BAC

Clone NameMSMg01-067L22
Chromosome10 (Build37)
Map Location 18,358,166 - 18,358,454
singlet/doubletsinglet
Overlap geneD10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L22.T7 (MSMg01no067_l22.b1)MSMg01-067L22.TJ (MSMg01no067_l22.g1)
ACCAG292406
length677672
length of high quality
(start - end)
---291 (79 - 369)
definitionCHROMAT_FILE: MSMg01no067_l22.b1 PHD_FILE: MSMg01no067_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:56 2005CHROMAT_FILE: MSMg01no067_l22.g1 PHD_FILE: MSMg01no067_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXT
NACTCGATGAANGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCTCAGAGATGCCCCTCAT
CTGATATATAAAATTTTTTTATAATAACTGGAAATGCAGATCTGCAACTG
CAACATTTATCCCTAACTGCGAAGTTTAATGTGCTAGTAAGAAGGTAGGG
ACCCAAAAGCTATCGAGGTTGGAAAGAACTGGAGTTCACCAGCTTATGTG
AGTATGAATGCCATCTAGGTATATCCTCCTTAGGCCACACTCAGTGAGGA
ACAGCCTGGTTGCAGAGCACTGTCAGAACACTGCAGCCCGTCCAGACCAT
ACTGAGAGCACTTTGTGTTCTTGCACACCAGACCTATTATTTTATTCCTG
CCATGTCCTCTCCAACTCCTCGATAACTCCCTGAATTGATTACTACTGTT
GCACACAAACACACACACTCGATGCTGAAAGGGAAAGAGGCCGTGGTTGG
ATCTGCTGGCATGGAAAGTCATGCCATTGCTAGAGGTGCCACAAAGCTCA
AAGACACTGCTGGGAGGTCTGCTTATGACTGAAATAATTTGTTGGATTTG
TTAACAATGTTTTCCAGCAGTGCCCTGCTATCTATGTGCAGATTAATTTT
TACAATAACAAATAACCAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l22.g1 MSMg01no067_l22.g1 CHROMAT_FILE:
MSMg01no067_l22.g1 PHD_FILE: MSMg01no067_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:56 2005
         (291 letters)



>mm_chr10_18357966_18358656
          Length = 691

 Score =  528 bits (273), Expect = e-154
 Identities = 285/289 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctcagagatgcccctcatctgatatataaaatttttttataataactggaaatgca 60
           ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 201 cttcctcagagatgcccctcatctgatatataaaaattttttataagaactggaaatgca 260

                                                                       
Query: 61  gatctgcaactgcaacatttatccctaactgcgaagtttaatgtgctagtaagaaggtag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatctgcaactgcaacatttatccctaactgcgaagtttaatgtgctagtaagaaggtag 320

                                                                       
Query: 121 ggacccaaaagctatcgaggttggaaagaactggagttcaccagcttatgtgagtatgaa 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 ggacccaaaagctttcgaggttggaaagaactggagttcaccagcttatgtaagtatgaa 380

                                                                       
Query: 181 tgccatctaggtatatcctccttaggccacactcagtgaggaacagcctggttgcagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccatctaggtatatcctccttaggccacactcagtgaggaacagcctggttgcagagc 440

                                                            
Query: 241 actgtcagaacactgcagcccgtccagaccatactgagagcactttgtg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtcagaacactgcagcccgtccagaccatactgagagcactttgtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)