BAC Information

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BAC

Clone NameMSMg01-068I11
Chromosome10 (Build37)
Map Location 103,769,914 - 103,770,238
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068I11.T7 (MSMg01no068_i11.b1)MSMg01-068I11.TJ (MSMg01no068_i11.g1)
ACCAG293002AG293003
length700703
length of high quality
(start - end)
321 (45 - 365)286 (73 - 358)
definitionCHROMAT_FILE: MSMg01no068_i11.b1 PHD_FILE: MSMg01no068_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:59 2005CHROMAT_FILE: MSMg01no068_i11.g1 PHD_FILE: MSMg01no068_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGCAAGTTTTATAGTTTAACTAATGGAATAAATACAGAAAATGT
CTAGATTTACTGGGAAAAGATTATGACTAAAACCAATTGGTCAACAGTTT
AAAATATAATATACTACTTTAAAAGGATTGCCTTATTTATCAGACTATAC
TGCCCTCATGAGTTAAACCACATGACAAGCTACATAGAGAACGTAATTTC
AGCCAAAGCCAAGGACTTCATCAAGCAATCTTTCTTTATGCATTACATAT
TTCTTTATTAAATGAGATTGTTCCAAATATATATATATATATATATATCA
TATATGTGAAAAATTTTTATACTACCCACCCCCACAAATTAATTATTTGC
ATGAATTTCTAAACTACAGAAAGTCCTATATATGATTGTATATATTGCCA
CATTAATTTTCATGTGATATCAATGGATTAGGCTTTAGTACTACAATGAG
TTGAGATAATTTATGTTCTCCTTTTCATTCAATTATGCTATTTCTATTCA
CGGGTTATTTTTCTCTTTGGTGTATATTTATGAGGCATAGTGATGTCTTG
CATATGGATAATTCCTAGGAAAACATGTATTTTAACTATAGCCATTGTCT
CATTGCCCATTCCTCTAAACCATCCCACTTCTTCTCCCCTTCTATTAGCG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACACCCAACGTTTGCTCAGGGCACCAGC
TCAGACCAGAGGAAAACTGTGCCACTGGTCAGGTGTAGATTCTGGGTGCC
TGAGACCCACTGGTCCCAGTTATTTCCAGTGTTGGGGCAGATGTTGTGTC
CTCCTCACCTCTGATCCTAAGATCCTGAGCATGTTTGAGAGCTTGCGAGT
GGAGATTCCTCTGGGTGTTGTTGGCCTGGCTGTGATCCTATGATCCTGGG
AGTGTTGGAGTACCTGGGGTGTGAATATTTCTCTGAATGTTGTGTAATGG
CCTACAGATTTTTTTTTCACCCCCCCGCCCCCTTTAACTTTTTAAACATT
TTCTTAGGTAATACAATAACATAGCTGAAAATAATTAATCATATCGGAGG
GGAGTAATTTAAACACAAAGGACCACACTATTTCTATAAACTTTGACAAC
TACATCTCTCTAAAGATTTCCACTTTGTGAAATATCTGAAATAAATATTT
TCATTATTGCGATTTTCATTTGAGCCCCTTTTTTATATCCCCTTCTAACT
ATCCAGTCTTGTCTTTTGTATGCCTACTTTTCATCTTTGCCTGAAGTCCA
CATTTTACCCATGATATCAACTGTTGTACCTTTCACCCATTAACTTGCAA
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_i11.b1 MSMg01no068_i11.b1 CHROMAT_FILE:
MSMg01no068_i11.b1 PHD_FILE: MSMg01no068_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:59 2005
         (321 letters)



>mm_chr10_103769710_103770430
          Length = 721

 Score =  567 bits (293), Expect = e-166
 Identities = 314/325 (96%), Gaps = 8/325 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattgcaagttttatagtttaactaatggaataaatacagaaaatgtctagattt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgcaagttttatagtttaactaatggaataaatacagaaaatgtctagattt 264

                                                                       
Query: 65  actgggaaaagattatgactaaaaccaattggtcaacagtttaaaatataatatactact 124
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 actgggaaaagattatgactaaaaccaattggtcaaaagtttaaaatataatatactact 324

                                                                       
Query: 125 ttaaaaggattgccttatttatcagactatactgccctcatgagttaaaccacatgacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaaggattgccttatttatcagactatactgccctcatgagttaaaccacatgacaa 384

                                                                       
Query: 185 gctacatagagaacgtaatttcagccaaagccaaggacttcatcaagcaatctttcttta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctacatagagaacgtaatttcagccaaagccaaggacttcatcaagcaatctttcttta 444

                                                                       
Query: 245 tgcattacatatttctttattaaatgagattgttccaaatatatatatatatatatat-- 302
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||  
Sbjct: 445 tgcattgcatatttctttattaaatgagatggttccaaatatatatatatatatatatgc 504

                                    
Query: 303 at------catatatgtgaaaaatt 321
           ||      |||||||||||||||||
Sbjct: 505 atacataccatatatgtgaaaaatt 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)