Query= MSMg01no068_j23.b1 MSMg01no068_j23.b1 CHROMAT_FILE:
MSMg01no068_j23.b1 PHD_FILE: MSMg01no068_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:06 2005
(582 letters)
>mm_chr10_22162151_22163134
Length = 984
Score = 1017 bits (526), Expect = 0.0
Identities = 568/582 (97%), Gaps = 4/582 (0%)
Strand = Plus / Plus
Query: 4 gaattca-tggaccaatgatccca-taaatcaagaaaaatggagatgaggcgatctcacc 61
||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaatggaccaatgatccaaataaatcaagaaaaatggagatgaggcgatctcacc 263
Query: 62 tcataaacaataaaaccttccctgaagactgtgattaaaatcaatttgctttctgaggat 121
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcataaacaataaaactttccctgaagactgtgattaaaatcaatttgctttctgaggat 323
Query: 122 gacataattcaccacaataattcttatacctaggaccaagtcctatacattagtagctcc 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 324 gacataattcaccacaataattcttatacctaggaccaagtcctgtacattagtagctcc 383
Query: 182 caacttaggacagccctgaatacaagatgatcagtctgatcagacaattcaaggagtggg 241
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 384 caacttaggacagccctgaatataagatgatcagaatgatcagacaattcaaggagtggg 443
Query: 242 cagtgatggactgacctggaatctcagtactgagaaggctgaggcagaagaattagcaag 301
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtgatggactgacctggaatcccagtactgagaaggctgaggcagaagaattagcaag 503
Query: 302 tttaaggtcagcctggacagggcagtggtggtgcatgcctttaatcctagcacttgggaa 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttcaaggtcagcctggacagggcagtggtggtgcatgcctttaatcctagcacttgggaa 563
Query: 362 gcaaagggaggcagatctctgtgttcaaggccagtctggtgtctagagttccaggagagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcaaagggaggcagatctctgtgttcaaggccagtctggtgtctagagttccaggagagc 623
Query: 422 cagg-ctacacagagaaaccctgtctcaaaagacaaggtcagtctgggctgcatagtcat 480
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 cagggctacacagagaaaccctgtctcgaaagacaaggtcagtctgggctgcatagtcat 683
Query: 481 atcttctcaaaagaacaaacaaagcaaacaattgaaaaatccattcattcaacttggtca 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 684 atcttctcaaaagaacaaacaaagcaaacaat-gaaaaatccattcattcaacttggtca 742
Query: 541 ctctacttcaccacaatccagtgtatgtagaactatgattca 582
|||||||||||||||||||||||||||| |||||||||||||
Sbjct: 743 ctctacttcaccacaatccagtgtatgtggaactatgattca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_j23.g1 MSMg01no068_j23.g1 CHROMAT_FILE:
MSMg01no068_j23.g1 PHD_FILE: MSMg01no068_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:06 2005
(388 letters)
>mm_chr10_3036007_3036794
Length = 788
Score = 712 bits (368), Expect = 0.0
Identities = 383/388 (98%)
Strand = Plus / Minus
Query: 1 gcacctcctgcaccatgcctgtctggatgctgccatgctccctgccttgatgataatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcacctcctgcaccatgcctgtctggatgctgccatgctccctgccttgatgataatggg 686
Query: 61 ttgaacctctgaaccctgtaagccagccccaattagttgttgtccgttataagacttgcc 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 ttgaacctctgaaccctgtaagccagccccaattagttgttgtcctttataagacttgcc 626
Query: 121 ttggtcatggtgtctgttcacagcagtaaaaccctaagacaggcaatggatgtggaacca 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 ttggtcatggtgtctgttcacagcagtaaaaccctaagacaggcaacggatgtggaacca 566
Query: 181 ggttactgccaaacccaaaactatggcctgtgatgctctgtgtgcactcaggtgtggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggttactgccaaacccaaaactatggcctgtgatgctctgtgtgcactcaggtgtggctc 506
Query: 241 agggtccttatgtttctctgagatggcagatgaagcagctttctagctaatagttatcct 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agggtccttagggttctctgagatggcagatgaagcagctttctagctaatagttatcct 446
Query: 301 tggcactcatagctaaggacctaaggttgccaggggactgctgccagcacagggagcctg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgggactcatagctaaggacctaaggttgccaggggactgctgccagcacagggagcctg 386
Query: 361 gttcatctggacaggctggcccatcgga 388
||||||||||||||||||||||||||||
Sbjct: 385 gttcatctggacaggctggcccatcgga 358
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space: 295241
Effective search space used: 295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
