BAC Information

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BAC

Clone NameMSMg01-068K08
Chromosome10 (Build37)
Map Location 7,362,927 - 7,363,174
singlet/doubletsinglet
Overlap genePcmt1
Upstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11
Downstream geneNup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046, Ust
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K08.T7 (MSMg01no068_k08.b1)MSMg01-068K08.TJ (MSMg01no068_k08.g1)
ACCAG293091AG293092
length810819
length of high quality
(start - end)
249 (142 - 390)192 (138 - 329)
definitionCHROMAT_FILE: MSMg01no068_k08.b1 PHD_FILE: MSMg01no068_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:08 2005CHROMAT_FILE: MSMg01no068_k08.g1 PHD_FILE: MSMg01no068_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCCCCCCCCTTTTTCTCCCCCCCCTTTTTTTTTTTTTTTCTTTNNNCN
ANTCAAGCTCTCCCTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCCAGAACCGCGGAATTCCTGATACCTTTCCCTGAGGACTTAAAGTC
TACAAAACAAGCAAAATATCTGAAAAGAAGTTTGTGATACCCCACTGTGT
GCCAGGCACCAATCTTAAGATATTTAATCAACAACAAGGGGAAAAAAAAA
TTGGCAAAATTGCCATCTCTGCAGAGTTATACTGTAGAAGCTACTGCACA
TTCATTTACATTTTAATCTAAGACAGATGCATCCACTCAGTAGACCATAA
CCTCCCGTGGTGGGCTCTGGACACCGGCCTCCTCAAAGCAATCTGATCAG
ACTCTGAGCATAGATGAACCTTTGCTCCCTGTGTCTTAGTGTTCCCAGCT
TACACTCTTGACAGTGTTACCAAATAAGCCTCTTGTGCCCCACTAAACAA
TGAACTGGACACAGTAAACAGGGCTTCTGCCATCTCCTCTCCTAAGGGAA
AAGATCCTTCTCTATTTTTAATAGACAGTATTACGGCCTGAACACCAATT
CTTGTTCTGCTTTTTTTCTGTTAAGCTGATAACTTACTCGAAATGTTATT
TCGAGTATACTGTTACTGCCGTATTATGCCAGTTAATTGGATATCAGTTC
TTGTTTAAATCCATTATTGCATTATTTGCTTTATTATAATGTCACTTGTT
TATTAATCATCGCTACCCCCTTATTTTTTATTTCCTCTTTATAGCCTTTT
CTTATGTTTN
TTTTCTTTTCTTTTTTTCTTTTTTTTTTTTTTTCTTCTTTTTTTNNNNTT
GTTCTCTTCTCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCCGAATTCCAGGAAAACCAGGGC
AGATGCTGTACAAGGCTTTTTTCTTTTTCTTCTTCTTCAAGACATGGTCT
CTCTGTGTAGCCCTAGCTGTCCTGGAACTCACCCTTTAAACTCAGAGACC
CACCTACCTATTTCTGCTTCCTGAGTGTCCCGATTAAAGGCATGAGTTAC
CACTGTCCAGCTTGTACCAGGATTCTTAAGATAATGGAGATATTAAGGCA
CAGTTTCTGCTCTCCTTGAAGCACATCACTGGGAGGAGACAATCATGCAC
ATAGTTCCAGGACAGTAAGAACATGATTTAATAACATGAGCGCTGCTGCG
ATTTATAAAATCATTGCATACTTTTCATAAGAAACACACTAATTGTAGCT
GATCTGAATGTTACACTGAAGAGCTCATGCTTTAGTTGAGCTCTTCATAT
CATAAATACACACACATATATATATATATATATACACACACACTCTCATA
TACTTATTCCTAATACACATATATATATACTCTTTTTCCACTTTATTTTC
CCTACATATTTTACCTCTTATTATTTTTCCATGGGACATAATTATACTTT
TACTATTATTATACTCAGTTTACGTTGAAATCTTTCTTCATAACCGCCAT
TCATTGTTATTTGTTTAATAAAAACAATAGGTCGTCCACCAATTTGTTAC
ATATTCTATATTCATAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k08.b1 MSMg01no068_k08.b1 CHROMAT_FILE:
MSMg01no068_k08.b1 PHD_FILE: MSMg01no068_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:08 2005
         (249 letters)



>mm_chr10_7362727_7363374
          Length = 648

 Score =  435 bits (225), Expect = e-126
 Identities = 243/249 (97%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaagtctacaaaacaagcaaaatatctgaaaagaagtttgtgataccccactgtgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaagtctacaaaacaagcaaaatatctgaaaagaagtttgtgataccccactgtgtg 260

                                                                       
Query: 61  ccaggcaccaatcttaagatatttaatcaacaacaaggggaaaaaaaaattggcaaaatt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggcaccaatctta-gatatttaatcaacaacaaggggaaaaaaaaattggcaaaatt 319

                                                                       
Query: 121 gccatctctgcagagttatactgtagaagctactgcacattcatttacattttaatctaa 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 320 gccatctctgcagagttatactatagaagctactgcacattcatttacattttaatctaa 379

                                                                       
Query: 181 gacagatgcatccactcagtagaccataacctcccgtggtgggctctggacaccggcctc 240
           |||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||||
Sbjct: 380 gacagatgcatccactcagtagaccagaacctcctgcggtgggctctggacacaggcctc 439

                    
Query: 241 ctcaaagca 249
           |||||||||
Sbjct: 440 ctcaaagca 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)