BAC Information

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BAC

Clone NameMSMg01-069G15
Chromosome10 (Build37)
Map Location 20,351,815 - 20,352,061
singlet/doubletsinglet
Overlap genePde7b
Upstream geneIl22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344
Downstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069G15.T7 (MSMg01no069_g15.b1)MSMg01-069G15.TJ (MSMg01no069_g15.g1)
ACCAG293677AG293678
length669679
length of high quality
(start - end)
247 (60 - 306)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no069_g15.b1 PHD_FILE: MSMg01no069_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:10 2005CHROMAT_FILE: MSMg01no069_g15.g1 PHD_FILE: MSMg01no069_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTAGTTT
CTCGTTAAAAACAATGGTAATTTAATGACATCAGATATCTCTTACCAATG
ATATTGCCTGCGTTCCTTTTGCTTGTTTTAGCCTTAAAAAAGGCACTGGA
GCCTAAGGTGTTCCTTGTTCTGTTTTCTTGAATTAGTTCATAGAATAGTT
ATGACCCAAAGGATCCTCCAGCCTCCCAGTGTAAAGCTCACACAAGGCTG
ACTGCCGCTACTGTGGAAGCCATTAGCACCTTGTGTGGAGACACAGCAGT
TTCTCTGCTCCGGGAGGTTGTGTTTCCAGGGTCTCCTTCTTTACTTTTTT
TGTAGTCCACCGCCCCTTGCTCAATCCTGCCTACTGCGTGGGTGGTACAG
TTAGCCCTGCAACACTGAACACTTGTGGCAGCCCTCAGCACTTCGGGATC
ACAGGCCAACAGATTTGTAACTACGGCATATTTTAGCTCATGCTCATGTT
TTTCTCCCTATGTTTTTCTAGTGAATGATCCTATTTCCTATCCTATTGCA
ATTTTGCTAATACGTCTTTACTATTTAGTTTTCTACTTTCTTGCTATGTC
TATTCCCAGCTACATTCTTCCATTGCCTTTGCATTTTGGCTTCTTCCCCT
CTATCCAACTTTCATCTAT
TCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAAAATTGGACATCAAGAAAACAAATAGCCCA
ATTAAAACATGGGCACCTGTGGGCATATATCCAGAAGATGTCCCAACCGG
TAAGAAGGACATATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAGGAATGGATACAA
AAAATGTGGTACATTTACACAATGGAGCACCACTCAGCTATTAAAAAGAA
TGAATTCACGAATTTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCC
TGATTGTTTTAACCCCCCCACCCCCCAACTCAAATGACATGTACTCACTG
ATAAGTGGCTATTAACCCAAAAACTAAGTATAGCGTGATATATGGTACAA
TGCGTAAAACATATGCTACTGATTAAGAACGATCACCACTGTGTGTACCT
TTTGCTCATTCTTATCATTGGAAACAATCACCCATGGATGTAGCTATACA
CATCACTTTTGTAGTCGATCACATAGGATGGCCTACCCCATACACTGCCC
TATTCCCGTGATCCCTCCCATATTTAGTCTTCCTGTCGCCGATTCTTTTT
TTTACCCTTTCCCTGCCTTCCGTCGCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_g15.b1 MSMg01no069_g15.b1 CHROMAT_FILE:
MSMg01no069_g15.b1 PHD_FILE: MSMg01no069_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:10 2005
         (247 letters)



>mm_chr10_20351615_20352261
          Length = 647

 Score =  470 bits (243), Expect = e-137
 Identities = 246/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatggtaatttaatgacatcagatatctcttaccaatgatattgcctgcgttccttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaatggtaatttaatgacatcagatatctcttaccaatgatattgcctgcgttccttt 260

                                                                       
Query: 61  tgcttgttttagccttaaaaaaggcactggagcctaaggtgttccttgttctgttttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttgttttagccttaaaaaaggcactggagcctaaggtgttccttgttctgttttctt 320

                                                                       
Query: 121 gaattagttcatagaatagttatgacccaaaggatcctccagcctcccagtgtaaagctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 gaattagttcatagaatagttatgacccaaaggatcctccagcctcccagtgcaaagctc 380

                                                                       
Query: 181 acacaaggctgactgccgctactgtggaagccattagcaccttgtgtggagacacagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacaaggctgactgccgctactgtggaagccattagcaccttgtgtggagacacagcag 440

                  
Query: 241 tttctct 247
           |||||||
Sbjct: 441 tttctct 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)