BAC Information

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BAC

Clone NameMSMg01-070B13
Chromosome10 (Build37)
Map Location 76,560,770 - 76,561,042
singlet/doubletsinglet
Overlap geneCol18a1
Upstream geneSlc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
Downstream geneLOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B13.T7 (MSMg01no070_b13.b1)MSMg01-070B13.TJ (MSMg01no070_b13.g1)
ACCAG294198AG294199
length746690
length of high quality
(start - end)
247 (124 - 370)273 (71 - 343)
definitionCHROMAT_FILE: MSMg01no070_b13.b1 PHD_FILE: MSMg01no070_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005CHROMAT_FILE: MSMg01no070_b13.g1 PHD_FILE: MSMg01no070_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTTNNNNNNNNNNCCCTTTTCCCNNNTTTCTTAGCTTCTTCGG
GTGGGTGTTCTAAATATGCGGCGCTAAACGACTCCTATTTCTAGAAATGC
GCGGAATCATTTTGTATACCACCTGAGTCTTTTTGTTTTAATATTTTATG
TATTCCTTGAAGATTCCATCCTAGCATGCACCCCCAGTACCATCCCAAAT
CCATGTCCCCAATTTGTTGTTGATGATGCTATTGTTATTAATAACCCCCT
GGGTCCAGTTAGTCTTGTCCACATGTACATGGGTGTGAGTCCAGCCACAG
GGGCATGGGAAACGTCCACAGAAGAGAGTTTCTCTACAACCGTCAACTGC
TAACTTTGCCCCTCTGCCCTGCCTCTATCCCTGTCGTCTTTTTGACTGGC
TTGATCTTGTGCAGGGCTTGCGCTGTAGCCACAGCTGCTGTGGTTATCTG
TGCAGCAACAGTGTCACGACAAATCTGCTCTTCAACTGTGAACACTTACA
CTCTGACCACTCTTCTGCCATGCATGCTCTCTCCACCTTGCATGGCGCCC
GTTTCACACAGATGTGTCAGGCTCAGTTACGCATACTTACCACTTTGACC
AGATATAAGTCTATAACTCTGTCTTGTTTGCTTGACTCTCTCTCTCTCTC
TGCTGCTACTTTTCTTTTCTAACTTCCAACCCCCCTTTTATACCTTTCTC
TGTAAAGATCTTATCACATTCCAGACTTATGGGGACTAACATTATG
NTCGATGATAGGNGAGGCCTGGCGACCGCCTGGATCGTTACTGGAGGGNG
AACTATAGAATTATCGCGAAATTCTTTTTTGGCTCTGTTGAGAGGAGCTG
CCAAATGCCAGGGCCATAAGATCACCAGCTCTCTTCTCTGGTTACAGCAA
TGGCGAGCGGGGAAGGGCCTGGGTGCCTATGCCAGGAAACCCATTCCCCT
GTAAGAAGCAAAGCCTGTGCCATGCTCTGAGAGGGCTGATGCAGGAGGCT
GGCCCCTCTGCATGCTAAGGCCTGTTGAGTCACTCACATGAGCTGAGATC
CAAGATGAGCTGAGTCCTACTTGGTTAACGCCCACCTTCCCAATAGTGAG
CAGGCATAGCTCTTTCTGACCGCCTATATTTTAATGCACATGCTTCATAT
AGAACCAACTGCAGTCACCATCCCCCCCCCCCCCGAAAAGCACAGCCAAT
GCTTGGCTCTGGAGGTACCAGCATCAAGAATGTCTGGTGCTCCCCAACTG
ACTGCACCAGGCTCCCGTTGGTACCGGAGCCCCTGACAGCCTCCCTCCCT
GAACTACCGCCAATCTATTCCCTTCACAGGCAACCTTTACCAAGCAAGAC
CCGTCTTTGCAAACATTGTATGGAAAACGGTGCGACCGTTTTGGCAATGC
AATTCCCTCCCTATTGCTTTCAGCTCTGGCACATGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b13.g1 MSMg01no070_b13.g1 CHROMAT_FILE:
MSMg01no070_b13.g1 PHD_FILE: MSMg01no070_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:02 2005
         (273 letters)



>mm_chr10_76560570_76561242
          Length = 673

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttttttggctctgttgagaggagctgccaaatgccagggccataagatcaccagct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 attcttttttggctctgttgagaggagctgccaaatgccaggaccataagatcaccagct 260

                                                                       
Query: 61  ctcttctctggttacagcaatggcgagcggggaagggcctgggtgcctatgccaggaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttctctggttacagcaatggcgagcggggaagggcctgggtgcctatgccaggaaac 320

                                                                       
Query: 121 ccattcccctgtaagaagcaaagcctgtgccatgctctgagagggctgatgcaggaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattcccctgtaagaagcaaagcctgtgccatgctctgagagggctgatgcaggaggct 380

                                                                       
Query: 181 ggcccctctgcatgctaaggcctgttgagtcactcacatgagctgagatccaagatgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcccctctgcatgctaaggcctgttgagtcactcacatgagctgagatccaagatgagc 440

                                            
Query: 241 tgagtcctacttggttaacgcccaccttcccaa 273
           |||||||||| ||||||||||||||||||||||
Sbjct: 441 tgagtcctacatggttaacgcccaccttcccaa 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)