BAC Information

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BAC

Clone NameMSMg01-070D06
Chromosome10 (Build37)
Map Location 14,400,402 - 14,400,984
singlet/doubletsinglet
Overlap geneVta1
Upstream geneAig1, EG666859, Hivep2, Gpr126, LOC100039571, LOC100039409
Downstream geneD230044M03Rik, EG666904, Nmbr, LOC666917, LOC637043, LOC100039492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070D06.T7 (MSMg01no070_d06.b1)MSMg01-070D06.TJ (MSMg01no070_d06.g1)
ACCAG294280AG294281
length680681
length of high quality
(start - end)
620 (42 - 661)584 (72 - 655)
definitionCHROMAT_FILE: MSMg01no070_d06.b1 PHD_FILE: MSMg01no070_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:11 2005CHROMAT_FILE: MSMg01no070_d06.g1 PHD_FILE: MSMg01no070_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGAAT
TCATTTCTAATACCTGAGGCAGTTGTATAAATATAGCACAATATTTTTAT
CCATTCTTTGGTTGAGGAAATCTAGGTTGTTTCTAATTTCTGGCTACTAT
TAATGAGTTGCTATGAACATAACTGAGTAAGTGTCTTGGTGGTAGTATGG
AGTGTCTTTTGGTTATAAGTCCAAGAATGGTATATTTGGGTTTTCAGGTA
GGTTTATTCCAAATTTTCTGAGGAAATGCCATATTGATTTCTGTAGTAGC
TGTACAAGTTTGGACGCCCATCAGTAATAAAGGAGTGTTCCTTTTGCTCC
CAATACTCACCATCATGAGCTGTCACATTCACATGTTTTGATCTTAGCCA
GTCTGACAGGTGTAAGAAGGAATCTCAAACTAGTTTTGATTTTCCCTGAT
GGCTAAACATGCTGAACATTTCTTTAACTGCTTCTCAGCTAGTTGAGATT
CCTCTATTGAGAATTTTCTGTTTAAATATGAATCCTATTTTTAATTGGAT
TGTTTAGTTTGTAGATGTCTAGTGTCTTGTGTTCTTTATATATTTTGGAT
ATTAGCCCTCGGTGAGGAGTTAAAGCTACTACCTTGAATAATATAGGATT
GTTGTTATTGTTGTTGATTTTAAAGCTCTC
CGATGCTAGGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCTTTTATCAACCACTGTAACAATCC
TCAAGCTGGGTATTGAGAAACCACATTTAAAAATCGTTGAAATCTGGCAG
TACACTTTTTTGTTAATATAATAAATATAAATTTATTAAACTTGAATACA
TACTCTGACGGGTTTCAGTAGATAGTATTGAGAATATTTATGAAATCCCC
AAGTTATGAATAGAAGTCTCAAAAACTAAAAAAAAAAAAAAAAAAAAAAA
AAAAGACTAATAATCTCTTAGTGCCTGCAGCATTTTTATCTTTGGTCCTC
ATGATGTATCATACAAACAAGAGGTGTTCTATATAATGGCAGGAGCAATA
AAATATAGTAAGAAATACTTGAGAAGGAAGCAATAAAAACTGTTATAATA
ACATCTATATGCTAGAGTACTTATAATTACTTATTACATATATTTCTTGA
CAGCTTTAGACAAGAGTTTTATAGTTGCATAAAGCTACCATAATCTCACA
AAACAAGATTTTGAAGAGGAAAGCAAAATTTTACTACAAAAAATAATTAA
AATTCAATCTACATATTTGGATTTAACTACTCTATTATTATAACACTGGA
ATGTACATTCAAGTTAGATTTTCAAACACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_d06.g1 MSMg01no070_d06.g1 CHROMAT_FILE:
MSMg01no070_d06.g1 PHD_FILE: MSMg01no070_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:11 2005
         (584 letters)



>mm_chr10_14400201_14401184
          Length = 984

 Score = 1122 bits (580), Expect = 0.0
 Identities = 583/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttttatcaaccactgtaacaatcctcaagctgggtattgagaaaccacatttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 attccttttatcaaccactgtaacaatcctcaagctgggtattgagaaaccacatttaaa 261

                                                                       
Query: 61  aatcgttgaaatctggcagtacacttttttgttaatataataaatataaatttattaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aatcgttgaaatctggcagtacacttttttgttaatataataaatataaatttattaaac 321

                                                                       
Query: 121 ttgaatacatactctgacgggtttcagtagatagtattgagaatatttatgaaatcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgaatacatactctgacgggtttcagtagatagtattgagaatatttatgaaatcccca 381

                                                                       
Query: 181 agttatgaatagaagtctcaaaaactaaaaaaaaaaaaaaaaaaaaaaaaaaagactaat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 382 agttatgaatagaagtctcaaaaactaaaaaaaaaaaaaaaaaaaaaaaaaa-gactaat 440

                                                                       
Query: 241 aatctcttagtgcctgcagcatttttatctttggtcctcatgatgtatcatacaaacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatctcttagtgcctgcagcatttttatctttggtcctcatgatgtatcatacaaacaag 500

                                                                       
Query: 301 aggtgttctatataatggcaggagcaataaaatatagtaagaaatacttgagaaggaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtgttctatataatggcaggagcaataaaatatagtaagaaatacttgagaaggaagc 560

                                                                       
Query: 361 aataaaaactgttataataacatctatatgctagagtacttataattacttattacatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataaaaactgttataataacatctatatgctagagtacttataattacttattacatat 620

                                                                       
Query: 421 atttcttgacagctttagacaagagttttatagttgcataaagctaccataatctcacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcttgacagctttagacaagagttttatagttgcataaagctaccataatctcacaa 680

                                                                       
Query: 481 aacaagattttgaagaggaaagcaaaattttactacaaaaaataattaaaattcaatcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacaagattttgaagaggaaagcaaaattttactacaaaaaataattaaaattcaatcta 740

                                                       
Query: 541 catatttggatttaactactctattattataacactggaatgta 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 catatttggatttaactactctattattataacactggaatgta 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)