Query= MSMg01no070_f04.b1 MSMg01no070_f04.b1 CHROMAT_FILE:
MSMg01no070_f04.b1 PHD_FILE: MSMg01no070_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:21 2005
(546 letters)
>mm_chr10_104501234_104502181
Length = 948
Score = 940 bits (486), Expect = 0.0
Identities = 531/546 (97%), Gaps = 6/546 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggtaccaacctggtgggtcataaccatccttaattttagttccatggcacca 64
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccaggtaccaacatggtgggtcataaccatccttaattttagtttcatggcacca 264
Query: 65 agcaccaagcatacatgatgcacatgcatgtggaaagagacaaattattcatacatataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaccaagcatacatgatgcacatgcatgtggaaagagacaaattattcatacatataa 324
Query: 125 agtaaaaccaaattttaaaatgttgggaaagaatttttatgaggaactcttttgtgtggt 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtaaaaccaatttttaaaatgttgggaaagaatttttatgaggaactcttttgtgtggt 384
Query: 185 taccatagacataaaattatagaatgtgaaatatgataatgattatcaaatgtagtatgc 244
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 385 taccatagatataaaattatagaacgtgaaatatgataatgattatcaaatgtagtatgc 444
Query: 245 tttcatgaacatattgagtacaaaatccaggattt-aggtctaattcaaac-cgtaa-ta 301
| ||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||
Sbjct: 445 tctcatgaacatattgagtacaaaatccaggattttaggtctaattcaaactc-taaata 503
Query: 302 tatttggctctggatggtcaaggtatatagtatgtaatgtttcttgactggaatttcccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatttggctctggatggtcaaggtatatagtatgtaatgtttcttgactggaatttcccc 563
Query: 362 tgaaaagaaattcaaat-ataagttcattctatacttacttcctaagataacaggcccgg 420
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgaaaagaaatt-aaattataagttcattctatacttacttcctaagataacaggcccga 622
Query: 421 tccttataaggactttaaaacagggatcattcaaaatacaaaatgctgtccggtgtttta 480
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 ttcttataaggactttaaaacagggatcattcaaaatacaaaatgctgtccagtgtttta 682
Query: 481 tttattttttgcttcatattcatttgttatattagtagagccaactttgaacccctatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tttattttttgcttcatattcatttgttatattagtagagccaactttgaacccctatcc 742
Query: 541 tatttt 546
||||||
Sbjct: 743 tatttt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space: 502768
Effective search space used: 502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no070_f04.g1 MSMg01no070_f04.g1 CHROMAT_FILE:
MSMg01no070_f04.g1 PHD_FILE: MSMg01no070_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:21 2005
(550 letters)
>mm_chr10_104673473_104674421
Length = 949
Score = 1017 bits (526), Expect = 0.0
Identities = 544/550 (98%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 1 catctaactgtgggataacagaaacatcaaagacagttgcagggtataaaaatcctagct 60
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||
Sbjct: 749 catctaactgtgggataacagaaacatcaaagacagttacagggtgtaaaaattctagct 690
Query: 61 gatgagcagtgaacactgatataaaaggcaaagagaagcaaggacatgattgtctactga 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 689 gatgagcagtgaacactgatataaaaggcaaagagaaacaaggacatgattgtctactga 630
Query: 121 tgcagagagaaagatgccccttggtggcctttaagatcccatttccatactagtgatggg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 629 tgcagagagaaagatgccccttggtggcctttaagatcccatttccatactagtgacggg 570
Query: 181 gacagttttcagctactaagaaaagaagagcagtcatggggctcattaaacattctggac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gacagttttcagctactaagaaaagaagagcagtcatggggctcattaaacattctggac 510
Query: 241 gaaggttgtagaaattaaaaaaaaagaagagacataaatgtataaatcaaaaaataaaga 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaaggttgtagaaatt-aaaaaaaagaagagacataaatgtataaatcaaaaaataaaga 451
Query: 301 tagttgtaagaagtgcacacatttaaatgtgatatgaaagatctgtccaaatacaagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tagttgtaagaagtgcacacatttaaatgtgatatgaaagatctgtccaaatacaagaag 391
Query: 361 caatgctgaaaatattgaagtcttaaagagtaggtttcttcctgggagatagaagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 caatgctgaaaatattgaagtcttaaagagtaggtttcttcctgggagatagaagaaaaa 331
Query: 421 cgaatgtgatatgttgaagtaacataggtgaaaaaatgaagaggcaggggactgagttta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cgaatgtgatatgttgaagtaacataggtgaaaaaatgaagaggcaggggactgagttta 271
Query: 481 tgtagtaagggaggaggtgccaagtaaataaatacatgtgtcatttagctatcttctgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgtagtaagggaggaggtgccaagtaaataaatacatgtgtcatttagctatcttctgat 211
Query: 541 cctgatgaag 550
||||||||||
Sbjct: 210 cctgatgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 949
Length adjustment: 10
Effective length of query: 540
Effective length of database: 939
Effective search space: 507060
Effective search space used: 507060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
