BAC Information

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BAC

Clone NameMSMg01-070I03
Chromosome10 (Build37)
Map Location 91,672,878 - 91,673,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041769, LOC100041799
Downstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I03.T7 (MSMg01no070_i03.b1)MSMg01-070I03.TJ (MSMg01no070_i03.g1)
ACCAG294512AG294513
length692688
length of high quality
(start - end)
87 (52 - 138)463 (74 - 536)
definitionCHROMAT_FILE: MSMg01no070_i03.b1 PHD_FILE: MSMg01no070_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:36 2005CHROMAT_FILE: MSMg01no070_i03.g1 PHD_FILE: MSMg01no070_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGCTAAACACTCCTATAGTCAGAGGATCCGCGGAATTCCACAAGCATG
CCAATCGGTAATCCAAATACGAGGATGATTCTGAAAGGAAACAGAGAGAG
AATCAGGTCAGTCAGAGGGGTGTGGGGGAGGGGGAGTGTGCTGTGCTTGA
ATAATGGTTAAGCTGTCATGTAGTGGTGACTATGGAATGATTGGTTCATT
TGTTGCTCAGTCTGCCACCATGATTTTCATGTTCGTTGTCCAGGACAGCC
GCCTGTGGAGAGGACGCTAGTTGTGGGTTAGGCACCTAGACCACTGCACC
CGGGTTTTTGTTGTGTGCCACAGGCGTTCCGTCATTTGTTATAGGCGAGC
GCTCGACCCTGTTGTTACCCTTTACCTTATGTTACTTTCTTCCCTCCCTT
TTTTCCCCCCCCTGCTTATCTGTTCTTTTTTGGTTCCGACACCTTTTTAT
TCTCCTCTCGTTTCTTGTCATTGTACGTCTGTTTTATTTTTTTGTCCCAC
ACTTCCGTCTCTCCACTATCTCCTCGTCATTATATTGTATTTACTAATTA
ACTTCTAATGCTTTTCATGCTTGATATTTTATCTTTTTCATCTCTTCGTT
TCTTTGTTTATCAATACCCTTCGGTCACCCTTTTTCTTACATGTCACATT
ATTTTTTTACCCGCTTTTCTTTGCCTTTATCACTCCCCCCCA
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATCTCGAACTCACTAAAGTGAAAAAAA
AAATCCAGGAAATGAGCTAAGGAACTGATTTTTTTGTTGTTGAGAAAAAG
CCCTCGATACCAAGATCATCTTTGGGGTACTGGTTCCTCTAACTCCATTC
CACTGACTTCTGATTGTATTTCCACAGGAAGAAAAGGAGGAGAGAAGGAG
GTTCCAAAATGAAGCAGCCTAGACCCTGACGGTTAGGAACAGGTTCAGAA
GGATGGCTGACTGCTCAGTCTGGCCTCAATATGGGCTAAAGAACCATACA
AGGGAGCAGAGAGAGCCTTCTGAGCTGAATAGCAATCAAAATGTACAGCC
GAAGCAAAAGGAGAAGATCCCAAATCCAATTAGAACTCTAAAGGGTACGG
AAACACAGCCCTCACTGGTTTTCTAGGGGCATAGCCAGGATCGTTAATAG
AATGAAATTTCCACTTGATGTTGGAAACTGAAGAACTCACAAAGGATAAT
ACCAAGACACAGCACAGATGTGGTCTTCCCAGGACACAAATGAGTTTCCA
CACCAACCTTTTTTGAATTCTACCACAGCAGCAAGAGCTTTTGGATCAGA
TCTAATGCCAGTTCCTGGATTAAAAAATAACCAGGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i03.g1 MSMg01no070_i03.g1 CHROMAT_FILE:
MSMg01no070_i03.g1 PHD_FILE: MSMg01no070_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:36 2005
         (463 letters)



>mm_chr10_91672678_91673540
          Length = 863

 Score =  895 bits (463), Expect = 0.0
 Identities = 463/463 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctcgaactcactaaagtgaaaaaaaaaatccaggaaatgagctaaggaactgattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctcgaactcactaaagtgaaaaaaaaaatccaggaaatgagctaaggaactgattttt 260

                                                                       
Query: 61  ttgttgttgagaaaaagccctcgataccaagatcatctttggggtactggttcctctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgttgttgagaaaaagccctcgataccaagatcatctttggggtactggttcctctaac 320

                                                                       
Query: 121 tccattccactgacttctgattgtatttccacaggaagaaaaggaggagagaaggaggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccattccactgacttctgattgtatttccacaggaagaaaaggaggagagaaggaggtt 380

                                                                       
Query: 181 ccaaaatgaagcagcctagaccctgacggttaggaacaggttcagaaggatggctgactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaaaatgaagcagcctagaccctgacggttaggaacaggttcagaaggatggctgactg 440

                                                                       
Query: 241 ctcagtctggcctcaatatgggctaaagaaccatacaagggagcagagagagccttctga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcagtctggcctcaatatgggctaaagaaccatacaagggagcagagagagccttctga 500

                                                                       
Query: 301 gctgaatagcaatcaaaatgtacagccgaagcaaaaggagaagatcccaaatccaattag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgaatagcaatcaaaatgtacagccgaagcaaaaggagaagatcccaaatccaattag 560

                                                                       
Query: 361 aactctaaagggtacggaaacacagccctcactggttttctaggggcatagccaggatcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactctaaagggtacggaaacacagccctcactggttttctaggggcatagccaggatcg 620

                                                      
Query: 421 ttaatagaatgaaatttccacttgatgttggaaactgaagaac 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatagaatgaaatttccacttgatgttggaaactgaagaac 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)