BAC Information

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BAC

Clone NameMSMg01-070K01
Chromosome10 (Build37)
Map Location 119,667,499 - 119,667,753
singlet/doubletsinglet
Overlap gene1190005P17Rik
Upstream geneCand1, Grip1, Helb, Irak3, Tmbim4
Downstream geneHmga2, LOC100042902, Msrb3, LOC100043488, Lemd3, Wif1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070K01.T7 (MSMg01no070_k01.b1)MSMg01-070K01.TJ (MSMg01no070_k01.g1)
ACCAG294603AG294604
length664813
length of high quality
(start - end)
254 (55 - 308)46 (76 - 121)
definitionCHROMAT_FILE: MSMg01no070_k01.b1 PHD_FILE: MSMg01no070_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:46 2005CHROMAT_FILE: MSMg01no070_k01.g1 PHD_FILE: MSMg01no070_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTAAACACTCCTATATTCAGAAGACCGCGGAATTCTCTCATTTCT
CGCCTGGAGAATGCCTTGGTGCCCTCACTTGTAATCTTTCAGGAGCTAAA
TGGGGATAGAAGTGGGACGAGGGGAGTCCTTCAGTTTAGTCATATCAGTA
AAGCTTGCTCCTTCTGCCCTCAAGTATGTTCCTCTTCATGTCCCCGTTGC
AGCTGAGGACTGTGCAACCTGCATAGTTTCCTCAGCCAAAAAATGCAGCT
GTCTCCCCTGTCTTTGTCCCCTCTGTCTGCACCAAAGCATTACTTGTTAT
ACCAAACCCCACGGCCAGAAGTTGTCGCCCATCCCTTGATCCCAGCCTTT
CTACTTTCCTCTCTGTGCTTCCTTTAAATGTAGACCAGACTCACTCGCTC
GCTCACTCACTCACTCACTCACTCATTCACTCACTCACTCACTCACTCAC
TCACTCACTGCTTACGATGTTAACTTTCAGAGCTGAAGAGGTGGCTCAGC
ACTTGGCGCTTTCACAGTTCATTTCCCAGCTCCTGTGTCAGGTGGCCCAC
AGCCAACTGGAACATCATCTCCAGCGACCTGACTGCACGCTCTTTCTTCC
TCCGTGGGCACCCGCACACACACGTGTGTTCACATGGGATTTACCAGCAT
GGCACCGACCAGCG
NACCATGACAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTCTTGTTTGAACTGATAAGA
GAGAGAGAGGGGGGGGGGTTGGTTNTTTTTTTTTTTTTTATTTTTTTTTT
TTTTTTTTTTTTTTTTTTNTTTTCTTTTTTTCGCTCCCTCCCCCGCCATC
CTCTTTTCTTTTTACTCACATTTATATTTTAATTTTATAATAAATTTATT
ATTAATATATATATATTATTTATAATAATAAAAATAAAATCACATAACAC
AAACATAACAGCAAAATCAAGAACAATCATAACAAATATATTATTTTTGT
TAAATGTTATCTGTATATAAATTAAATTAAAAAAATACCTTTATTTTATT
TATAAATTTATATTTTTAATAATATAATTATTCTATTTATATATTTATAT
ATATATTATTTTATAATTTAATATAAACTTACATATTTTATATTTTGATG
TTTCGCACTCCCGCCAACACCACGCCACCTCTTCCGTTATGCTCCCCGGA
ATCTGGAAGGTGGGACGGGATGATAAAGAAATATACACTACATCACGATA
GACAATACCATCAACACCCTTGTTACTTTGTTCTCTGCCGTAATTGAAAG
GACGTACCAGTCATGAGAGTCGTGATAGCTCCCGTGATAATCCACAACCA
ACCCGAGATCGACACGCTCTAATTGGATGAATAAAGCCTTGGCAGAGGAA
TCGACGCCCGGGCCTCAGAGGGCATTATAAGTAAAATTAGGCTACATCAC
CTACTATGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_k01.b1 MSMg01no070_k01.b1 CHROMAT_FILE:
MSMg01no070_k01.b1 PHD_FILE: MSMg01no070_k01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:46 2005
         (254 letters)



>mm_chr10_119667299_119667953
          Length = 655

 Score =  431 bits (223), Expect = e-125
 Identities = 247/255 (96%), Gaps = 1/255 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggagaatgccttggtgccctcacttgtaatctttcaggagctaaatggggatagaagtg 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 tggagactgccttggtgccctcacttgtaatctttcaggagctaaatgggaatagaagtg 260

                                                                       
Query: 61  g-gacgaggggagtccttcagtttagtcatatcagtaaagcttgctccttctgccctcaa 119
           | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gagacgaggggagtccttcggtttagtcatattagtaaagcttgctccttctgccctcaa 320

                                                                       
Query: 120 gtatgttcctcttcatgtccccgttgcagctgaggactgtgcaacctgcatagtttcctc 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gtatgttcctcttcatgtccccgttgcagctggggactgtgcaacctgcatagtttcctc 380

                                                                       
Query: 180 agccaaaaaatgcagctgtctcccctgtctttgtcccctctgtctgcaccaaagcattac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaaaaaatgcagctgtctcccctgtctttgtcccctctgtctgcaccaaagcattac 440

                          
Query: 240 ttgttataccaaacc 254
           |||||| || |||||
Sbjct: 441 ttgttacactaaacc 455


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 655
Length adjustment: 9
Effective length of query: 245
Effective length of database: 646
Effective search space:   158270
Effective search space used:   158270
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)