BAC Information

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BAC

Clone NameMSMg01-070M11
Chromosome10 (Build37)
Map Location 43,233,872 - 43,367,772
singlet/doubletdoublet
Overlap geneAK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190
Upstream geneSnx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik, Pdss2, LOC100042155
Downstream geneLOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070M11.T7 (MSMg01no070_m11.b1)MSMg01-070M11.TJ (MSMg01no070_m11.g1)
ACCAG294719AG294720
length672689
length of high quality
(start - end)
144 (55 - 198)238 (75 - 312)
definitionCHROMAT_FILE: MSMg01no070_m11.b1 PHD_FILE: MSMg01no070_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:58 2005CHROMAT_FILE: MSMg01no070_m11.g1 PHD_FILE: MSMg01no070_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,233,872 - 43,234,015)(43,367,535 - 43,367,772)
sequence
GCCGCTATACGACTCCTATTTCCAGAGGATCCGCGGAATTCCATGGTATC
CGTTCTGGTCTTGAGGATGTAACCGAGAGGATTCCAAGCCATGTGAAAAT
TGTCCTGCTTTCCAGAAAGTGGAGTGTGGCCCTGCAACATCAGAAGCACA
ATCGGCCATTGAGTTTTTACAAGTCCCATCTCGTCACATCTGATAAATGG
CGTTCTCTAGGAACTGACCGCGACTTTTTGCAACCCAGAGTCGTGCTACA
TTCTGGGAACCTGCATTTTGGTTTCCTTAATACTTTAACTATGTAGGGCT
TCTCTCCTCCCAACCCCCACCTCCACCCCCAGTCCCATCATCTCTTCAGC
GAAAAGAGCTGGTCACTCTGGAATCTGCTTCCTGCCCACTGGACCGTATG
TTGTCCTCACTCACCTCTCCGTACAGGTAGTTCCAGCGCCCATTTTTTTT
TCATGTATCTATATAACTATACAATACTATTTTTTCAGAACTTAAAGGTC
TCCATGACATCTGTTGTCAACCATTTTCCCTGTCCTCATCAAATATTTTT
GTTTGTGTCCTGGAAGATTCTTGCCCTGACTCCGTAGGTTTATTTATTTT
CCCCGACACCCCGAAGTTCCCTTCATTATCATGTCCCCTCTACCTGGCAT
TCGTCCTCTGATCTCTCACTTT
NCAATGAAGCGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTACCCGCGAACTTCAATATTCATTTAAAAGGAACGGTCAGTG
TTTCTAGAGCAAAGCTAATATCTCTAAGGAGCTCTAGCCCCTCCACCACC
ACAATCCCACGAGCTTGGGGATATGTATGAAGCATTCCTTCTTCATATAG
ATTTGTGTTTTCCTGTGGTATCCAAGTCAATTACAGCTCTAAATTTACTC
CAGGACGTTTTGTGCTGTTTCCCTGCCCCCATCAAAGCAACCAAAACTCT
GCTTTCTGTTTTGATTATTTACTTTTAAATGCCCTAGTTCCTAAGCCCCC
AAAGGGATAATAATCAGTGTTCTCATTAAGCATTGGATGTCTATATTAGA
TATACCTCCCTATAATTGTTATGTGATTGAAGGTCAAATGTATTTAACGT
TCCAGCGTCTATTTTATCTTCCCCCCATTGTTTTTCTCTTACTCTCAAGT
TTGTTTTCCTGCAAGATTCCACTTGTTCCAACAAAACGCATTGGAATTAT
ATATATTTTATAATTAAATTCTCTTCCTAATATCGACACATTGAACAGAA
CGACCCAATGAACGAAACAAAAGACTCAAAGATAGAATGTTAGTAAGTAT
CTATGTTAATACATCATTTTATATTTTACCGGATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_m11.b1 MSMg01no070_m11.b1 CHROMAT_FILE:
MSMg01no070_m11.b1 PHD_FILE: MSMg01no070_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:58 2005
         (144 letters)



>mm_chr10_43233672_43234215
          Length = 544

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtcttgaggatgtaaccgagaggattccaagccatgtgaaaattgtcctgctttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtcttgaggatgtaaccgagaggattccaagccatgtgaaaattgtcctgctttcca 260

                                                                       
Query: 61  gaaagtggagtgtggccctgcaacatcagaagcacaatcggccattgagtttttacaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagtggagtgtggccctgcaacatcagaagcacaatcggccattgagtttttacaagt 320

                                   
Query: 121 cccatctcgtcacatctgataaat 144
           ||||||||||||||||||| ||||
Sbjct: 321 cccatctcgtcacatctgagaaat 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_m11.g1 MSMg01no070_m11.g1 CHROMAT_FILE:
MSMg01no070_m11.g1 PHD_FILE: MSMg01no070_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:58 2005
         (238 letters)



>mm_chr10_43367335_43367972
          Length = 638

 Score =  453 bits (234), Expect = e-132
 Identities = 237/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattcatttaaaaggaacggtcagtgtttctagagcaaagctaatatctctaaggagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tattcatttaaaaggaacggtcagtgtttctagagcaaagctaatatctctaaggagctc 379

                                                                       
Query: 61  tagcccctccaccaccacaatcccacgagcttggggatatgtatgaagcattccttcttc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tagcctctccaccaccacaatcccacgagcttggggatatgtatgaagcattccttcttc 319

                                                                       
Query: 121 atatagatttgtgttttcctgtggtatccaagtcaattacagctctaaatttactccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atatagatttgtgttttcctgtggtatccaagtcaattacagctctaaatttactccagg 259

                                                                     
Query: 181 acgttttgtgctgtttccctgcccccatcaaagcaaccaaaactctgctttctgtttt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 acgttttgtgctgtttccctgcccccatcaaagcaaccaaaactctgctttctgtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)