BAC Information

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BAC

Clone NameMSMg01-071A16
Chromosome10 (Build37)
Map Location 104,398,058 - 104,398,186
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071A16.T7 (MSMg01no071_a16.b1)MSMg01-071A16.TJ (MSMg01no071_a16.g1)
ACCAG294920AG294921
length700721
length of high quality
(start - end)
389 (41 - 429)129 (72 - 200)
definitionCHROMAT_FILE: MSMg01no071_a16.b1 PHD_FILE: MSMg01no071_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:19 2005CHROMAT_FILE: MSMg01no071_a16.g1 PHD_FILE: MSMg01no071_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTCCTATAGGTTCAGAATACGCGGAATTCTA
CCAGATCTTCACAGAAGACTGAATACCAATACTCCTCAAACTATTCCGTA
AAAGAGAAGCAGAATGAACACTGTCTAATTCCTTGTATGAAGCCACAATT
ACTCTGTTAACTGAGCCTCACAAAGTCCCAACAAAGAAAGAGAATGTTAG
ACCAATTTCCCTTATTAATATCAATGCAAAATTACTCAAAACAATTCTCA
CAAACTGAATCAAAGACCACTATCAATTAGGCTTCACACCAGGCATGCAT
AGTTCAATATACAGAAATCCATCAACATAATCCACTATATAAACAAACTC
AAAAAAGTGAATCCTATGATCATCTCATTAGATGCTGAAAAAGTCTTTGA
CAATATACTAAAACCCTTCTTGTTAAAAGGCCTGAATAGATCAGTAATTA
CAGTAATTTACCTAAAAATAATAATAGCAATATTCCACCGATTATCTGCC
TACATCAAATTAAATGGAGTGATTCTTGAAGTAATCCCACTAAAATCTGG
GACAATACAAGGATGGACTCTATCTCCCTATTTATTCCCAGTTTTATTTG
AATTTTTTACCTAAACGCCTTTACCCTCTACACGGAGCCCAAGTTTAACA
ATTGCCATGGAAAAATTCTTGGTATATGGTTAATTTGCAAATGATAAGTT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACAGTATAAAATTTGTACCGTGATTTCA
TAGAGTAGGAGGTACCACCGCCTTCTTCCAACCCAACTTACATAAATGTG
TACATAAACTTCTGCTTCAAAACAGAAAATAAACTAGCTATGCTCATGGG
ATAAAAGGGTTCGTTACTGTATTTCACAATAGTATCTATTTGATTCTGTA
TATATTTATTGCTGCATATAAAAACCTAGTCTGATATTTAACATTAACTT
GAGCTGTGACAAATATATAGCTGTGATGCGCGATATATCCTCAGGTACTT
ATGCCCAGAATACCGTGTACAGTGCTGATTTGTATATTCTCTATCTTATG
ACACTATATTCCAATAAAATCTTGTTTAGATCTTATTTACTTAATTATTC
TCCAAACGTCACTGGATGTTTTCTAGGTTTGTATTTTCAAGTTTGTTTTT
TTCTGAACACGCAATATCGGTTTGCTCCCCCTTGTTTGTCTAGTGCAATC
ATTTTAGAAAATCAAGCCGGTTCCTCCGACCTCTATAGTCTTTCTCTGCT
TTTTTTCCCGAACGGCTAGAATCTATAAGTGGTTGCACCAATCCGCAGTG
TTGCTACATGGAAACAGTCTATGTCTGGTTGTGTGATCTACCTCCCCCTG
TGCTCTTATGATGCCCGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_a16.g1 MSMg01no071_a16.g1 CHROMAT_FILE:
MSMg01no071_a16.g1 PHD_FILE: MSMg01no071_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:19 2005
         (129 letters)



>mm_chr10_104397858_104398386
          Length = 529

 Score =  242 bits (125), Expect = 7e-69
 Identities = 128/129 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagtataaaatttgtaccgtgatttcatagagtaggaggtaccaccgccttcttccaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cacagtataaaatttgttccgtgatttcatagagtaggaggtaccaccgccttcttccaa 270

                                                                       
Query: 61  cccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cccaacttacataaatgtgtacataaacttctgcttcaaaacagaaaataaactagctat 210

                    
Query: 121 gctcatggg 129
           |||||||||
Sbjct: 209 gctcatggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)