BAC Information

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BAC

Clone NameMSMg01-071H07
Chromosome10 (Build37)
Map Location 128,314,588 - 128,314,884
singlet/doubletsinglet
Overlap gene1110005A23Rik
Upstream geneRdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2
Downstream geneGdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H07.T7 (MSMg01no071_h07.b1)MSMg01-071H07.TJ (MSMg01no071_h07.g1)
ACCAG295235AG295236
length671676
length of high quality
(start - end)		314 (50 - 363)299 (77 - 375)
definitionCHROMAT_FILE: MSMg01no071_h07.b1 PHD_FILE: MSMg01no071_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:52 2005CHROMAT_FILE: MSMg01no071_h07.g1 PHD_FILE: MSMg01no071_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCAAAAATTGCGGCGCTAATACGACTCCTATTTCAAGAGGAGCGC
GGAATTCCTGATCTTCCCAAGACTTTTATCATGAATGGGTGTTGGATCTT
GTCAAATGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTT
TGAGTTTGTTTATATAATGGATTACATTGATGGATTTTCATATATTAAAC
CATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGC
TTTAATGTGTTCTTGGATTCGGTTAGCTAGAATTTTATTGAGAATTTTTG
CATCGATATTCATAAGATAAATTGGTCTGAAGTTCTCTATCTTTGTTGGG
TCTTTCTGTGGTTTACGTATCATAGTAATAGTGGCTTCATAATATGAGTT
GGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAGCTTGTGCAGAACTG
GAATTAGATCTTCTTTGAAAGTCTGATACAACTCTGCTCTAAACCCGTCT
GTACCTGGGCTTTTTTTGACTGGTAGACTATTAATAACTAATTCTATTTT
TTTATGCGATATGTTACTGTTTACATGGTCAACTTGATCCTGATTCTACT
TTGGTATCTGTTATCCTGTCCCGAAATTTGTCCATTTCGCCCATTTTCTC
CAGTTTTGTTGAGTATAGTCT

TTTGGGCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGCAGTTTTATTTAACTGCTC
TTCTGCGTTTAAGATTGTTGTGGTTTTTGTTTTTAATTATTTTTGCTTAT
TAATAAAAAAGGAAGAAAAGAAAATGTGTTTTATTAGGTGTTCCTTTTAA
GTTTCTAGAGCCTGATTAGACCACATAGAGGGAGTGTCAATGGCAAATAT
TAAGGGGACTAACTGTAATGCCTATATCATGTAGAATAAGAAGATAAAGA
AGAGGATTGCGCCTTTAATCCCAGCACTCTGGAGGTAGAGGCAGGCGGAT
TTCTGAGTTTAAGGCCAGCCTGGCCTACAAAGTTAGTGCCAGTATAGCCA
GGGCTACACAGATAAACCCCGTCTTGAAAAACCTTAATAAAAACAAAATA
AAAATAAAAGAGGAGGATTGGTTCTACCATCTAAGCCTATTTATTATCTT
CTTCATACTCACAGATATGCTTTTATTTTATCCTTCATAAATGAGGTCTT
TGTCACCTCTAGTCTTTGCTTGGTTTGAAACAGTCCATTTCTGAAGTATA
AAAGCCCTGCGGTATTTAGGAATTGTTTAGTATAAAATGTGGGGTTAATG
ACTGACTGCCTTCTACTTTGAATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h07.g1 MSMg01no071_h07.g1 CHROMAT_FILE:
MSMg01no071_h07.g1 PHD_FILE: MSMg01no071_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:52 2005
         (299 letters)



>mm_chr10_128314388_128315086
          Length = 699

 Score =  528 bits (273), Expect = e-154
 Identities = 291/297 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagcagttttatttaactgctcttctgcgtttaagattgttgtggtttttgtttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagcagttttatttaactgctcttctgcgtttaagattgttgtggtttttgtttttaa 260

                                                                       
Query: 61  ttatttttgcttattaataaaaaaggaagaaaagaaaatgtgttttattaggtgttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttttgcttattaataaaaaaggaagaaaagaaaatgtgttttattaggtgttcctt 320

                                                                       
Query: 121 ttaagtttctagagcctgattagaccacatagagggagtgtcaatggcaaatattaaggg 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagtttctagagactgattagaccacatagagggagtgtcaatggcaaatattaaggg 380

                                                                       
Query: 181 gactaactgtaatgcctatatcatgtagaataagaagataaagaagaggattgcgccttt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gactaactgtaatgcctatatcatgtagaaaaagaagataaagaagaggattgcgccttt 440

                                                                    
Query: 241 aatcccagcactctggaggtagaggcaggcggatttctgagtttaaggccagcctgg 297
           ||||||||||||| ||||| |||||||||||||||||||||||  ||||||||||||
Sbjct: 441 aatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcctgg 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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