BAC Information

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BAC

Clone NameMSMg01-071I13
Chromosome10 (Build37)
Map Location 100,845,044 - 100,845,343
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071I13.T7 (MSMg01no071_i13.b1)MSMg01-071I13.TJ (MSMg01no071_i13.g1)
ACCAG295294AG295295
length727713
length of high quality
(start - end)
305 (44 - 348)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no071_i13.b1 PHD_FILE: MSMg01no071_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:58 2005CHROMAT_FILE: MSMg01no071_i13.g1 PHD_FILE: MSMg01no071_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATATTTGCGGCGCTAAACGACTCCTATAGGTACAGGATCCGCGGAAT
TCCATAAAATATTTATCTTCAATATCTGATTATTTAAATAAGGCATTATG
ATTTTTTTTTTTATTTAGAAAAGAATAAAATGTCCTTCTGCCCTGGGCAT
TTGAAGAATTCATTATGTGTCTAATCAGACTTAATTTTGTTGGTATGTTA
TTAAATATCTAAAATTTAACAATAAGAAAGCCAGTGACCTGATTTGAAAA
TGAGAAAACTACCCTGACAGCTTATAAGGGAGGTTATACAAGTGACAACC
AAGTGACATTGACACCTCTTGTCATGCATAATCAACAAAATGCAGAGACC
ATATAGATGGTTTGTTATAGTATCTGAAGTAGGGAACCTGACAACACCTA
CTACTAGTGACTACTCAGGAGGGACTGGCACTCCCATTAGTTACTGTTGC
TGATGTGTAATGCTACAGACCCTTTATATTATACTTTGTTATATTCATAT
TATAAAAATGCCCCATTTAAGATAAAGATATTGTCCACTCATGGTCACTA
CACATAACCTGCTCACTGTCTGCTGACATATAGTGTTCTTATATGTTGTA
AACTTATAATCTTAGGTATATGCTTCCTCATACAATATCTTGTATGATTA
CCCGGTCACATAATAATAAAGCAAACTACATTTTAAATTGATAAAACAAA
GTATTATCTATGTATATTGTCTTAATN
ATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATACCGAGAAATGAACCCACACACCTATG
GTCAATTGATCTTTGACAAGGGAGTTAAAACAATCCATTGGAAAAAGACA
ATATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGTATAAGA
ATTTGAAACTAATAGAGGAGTAAGTGGGGAATCGTCATGAAGATATGGGT
ACAGGGGAAAAATTCCTGAACAGAACAACAATGGCTTGTGCTGTAAGATC
GAGCATCTACAAATGGTATCTCATAAAATTGCAAAGCTTCTGTAAGGCAA
AAGACACTGTCAATAAGACAAAAAAGCCACCAAGAGATTGGGAAAGGATC
TTTACCAATCCTAAATCAGATAGGTGACCATTATCCATTATAAACAAAGA
ACTCCAGATGCTGGACTCCAGAATTGAAATATTCCTATTAAAATGTGGTA
TATATAGCTTAACTTAGATTTCTTATCTGATGAATACTGATTGGCTGACA
AGCACATGAATATCTTGTTCAAATATCTTAATCATAATGGGAATAATTAT
CAATATAAACATGATATTCCACCTCAACCCTATTTGAATGTGTAATAACA
TACACTCAGGTGTAATAAATATGTTGTCTCGCACGCGGTAATAGAAGGAA
CTCTCCCCCATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_i13.b1 MSMg01no071_i13.b1 CHROMAT_FILE:
MSMg01no071_i13.b1 PHD_FILE: MSMg01no071_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:58 2005
         (305 letters)



>mm_chr10_100844841_100845543
          Length = 703

 Score =  557 bits (288), Expect = e-163
 Identities = 298/302 (98%), Gaps = 2/302 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattccataaaatatttatcttcaatatctgattatttaaataaggcattatgattttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccataaaatatttatcttcaatatctgattatttaaataaggcattatgattttt 263

                                                                       
Query: 64  ttttttatttagaaaagaataaaatgtccttctgccctgggcatttgaagaattcattat 123
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttt--atttagaaaagaataaaatgtccttctgccctgggcatttgaagaattcattat 321

                                                                       
Query: 124 gtgtctaatcagacttaattttgttggtatgttattaaatatctaaaatttaacaataag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 gtgtctaatcagacttaattttgttggtatgttattaaatatctaaaatttaacaattag 381

                                                                       
Query: 184 aaagccagtgacctgatttgaaaatgagaaaactaccctgacagcttataagggaggtta 243
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 382 aaagccagtgacctgatttgaaaatgagaaaactaccctgacagcttaaaagggaggtta 441

                                                                       
Query: 244 tacaagtgacaaccaagtgacattgacacctcttgtcatgcataatcaacaaaatgcaga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tacaagtgacaaccaagtgacattgacacctcttgtcatgcataatcaacaaaatgcaga 501

             
Query: 304 ga 305
           ||
Sbjct: 502 ga 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 703
Length adjustment: 9
Effective length of query: 296
Effective length of database: 694
Effective search space:   205424
Effective search space used:   205424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)