BAC Information

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BAC

Clone NameMSMg01-073B08
Chromosome10 (Build37)
Map Location 29,267,651 - 29,405,782
singlet/doubletdoublet
Overlap geneEG630389
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
Downstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073B08.T7 (MSMg01no073_b08.b1)MSMg01-073B08.TJ (MSMg01no073_b08.g1)
ACCAG296469AG296470
length707704
length of high quality
(start - end)
309 (47 - 355)236 (75 - 310)
definitionCHROMAT_FILE: MSMg01no073_b08.b1 PHD_FILE: MSMg01no073_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:02 2005CHROMAT_FILE: MSMg01no073_b08.g1 PHD_FILE: MSMg01no073_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,405,480 - 29,405,782)(29,267,651 - 29,267,886)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTTTTAACAAATTACATTAATCAAAGCCAAAAATTTGACTTC
CAGGAATTTAAGATATAATAAGACTGTAGATTTCTAATAGTATTGTGCTT
AGTGGAAAACAGTTTGTAATTCCATCAATTTTGCATTTTCATAAAGAATT
CAAATGGTTTTTAAAGTCAGAAATTGTGTTCAAAATACTATCCAGTTGAC
TCAAAATAAAACTCAACAAGGAAAATAATTCAATACCATGATATCATAAG
CCAATCTTAGTGTAGTTAACGTATTACCAAAGGAATGGTTAGTAAAATAA
TGTGTTTTGTCATACTCAAAGAAATTTTCTTTTGGTTTTCTAATAGTGTA
GAGATAATCCGTTTCTGCACACAAACATATTATTTTATTTTTAGCACTAA
CAGAAGCATATGAATGAAAAGCTTTTTGTCTTCATGTGATTGTCTCATTG
TATTACTCTGAAACTTTCTTTAAACCTATTGTAGCGATTCTTGAACGCTT
TTATCTTTAAAAGAGTTCTTTCTCCCTCATTTCCCGAGAGTAATAACCGA
TTATCTTTGCCAAGAGTCTAACGTATTTTAACGACGCCATTATCCCCTTA
TGGCCCCTAGTTTTCCTTGCACTAAACTTTTTTTGAACTTCTTTTTCCAC
CTTTTAG
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACATTTCCCACCACTTCTTTACGCAT
GAGGTATAAATTGGAAAGAAAGGAGAACAAACCTGGCATTAGTTACTTTA
AGAAACATACTTCAAGAGTCGGGATTGAATCCATGACATTCTCATTTGAG
TGCTACTATTGTCATGGCAACACATAGGATGCCTTGGATGAGGTCCCTGA
CTGGACAGAGCATGTGTTAGAATCACAGCTGTGTGGCCCTTGTGCTGCTA
ATATTTCTCTTGCCAGGTTTGTAATCCCTCATTCTGAATAGGCTCCAGCA
TATATAAACCTTCAGATATGCCCCATGCGAGTAATTAAAACTTTAATCAT
ACGGAACCTGATAAGGAAACATAAAGAAAGAATATATTCCAAAGTCCTCA
TCTGACCCCAGTGGGCTCAACGTCTTCTTTGGAAAATATAACATGCCCAC
TACCACTAAATGATCAGTTTTAAAAGCTCCTTGATCTATTCTATGTGACC
TGCGTCTTGTTTGCTATTGTATCTGTCCGCTGCCACTCTTGTCATCCTTC
TACCTTCCTTCCCCTTTCCTCTTTTCTACGCATCCCTTCCCTTCTCGTTC
CTCCCGCTCCATTTTTTTTTACTCCCCGATTCTTTACTACCTCTTTACTC
CCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_b08.b1 MSMg01no073_b08.b1 CHROMAT_FILE:
MSMg01no073_b08.b1 PHD_FILE: MSMg01no073_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:02 2005
         (309 letters)



>mm_chr10_29405277_29405985
          Length = 709

 Score =  555 bits (287), Expect = e-162
 Identities = 299/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcattttttaacaaattacattaatcaaagccaaaaatttgacttccaggaattt 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaattcattttttaaaaaattacattaatcaaagccaaaaatttgacttccaggaattt 447

                                                                       
Query: 64  aagatataataagactgtagatttctaatagtattgtgcttagtggaaaacagtttgtaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aagatataataagactgtagatttctaatagtattgtgcttagtggaaaacagtttgtaa 387

                                                                       
Query: 124 ttccatcaattttgcattttcataaagaattcaaatggtttttaaagtcagaaattgtgt 183
           ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttccatcaatttttcatttccataaagaattcaaatggtttttaaagtcagaaattgtgt 327

                                                                       
Query: 184 tcaaaatactatccagttgactcaaaataaaactcaacaaggaaaataattcaataccat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcaaaatactatccagttgactcaaaataaaactcaacaaggaaaataattcaataccat 267

                                                                       
Query: 244 gatatcataagccaatcttagtgtagttaacgtattaccaaaggaatggttagtaaaata 303
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 266 gatatcataagccaatcttagtgtagttaacttattaccaaaggaatggttagtaaaata 207

              
Query: 304 atg 306
           |||
Sbjct: 206 atg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no073_b08.g1 MSMg01no073_b08.g1 CHROMAT_FILE:
MSMg01no073_b08.g1 PHD_FILE: MSMg01no073_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:03 2005
         (236 letters)



>mm_chr10_29267451_29268086
          Length = 636

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatttcccaccacttctttacgcatgaggtataaattggaaagaaaggagaacaaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttcccaccacttctttacgcatgaggtataaattggaaagaaaggagaacaaacct 260

                                                                       
Query: 61  ggcattagttactttaagaaacatacttcaagagtcgggattgaatccatgacattctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcattagttactttaagaaacatacttcaagagtcgggattgaatccatgacattctca 320

                                                                       
Query: 121 tttgagtgctactattgtcatggcaacacataggatgccttggatgaggtccctgactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgagtgctactattgtcatggcaacacataggatgccttggatgaggtccctgactgg 380

                                                                   
Query: 181 acagagcatgtgttagaatcacagctgtgtggcccttgtgctgctaatatttctct 236
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagcatgggtgagaatcacagctgtgtggcccttgtgctgctaatatttctct 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)