BAC Information

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BAC

Clone NameMSMg01-073E04
Chromosome10 (Build37)
Map Location 40,797,891 - 40,798,297
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
Downstream geneA530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2, 1700016J18Rik, LOC624784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E04.T7 (MSMg01no073_e04.b1)MSMg01-073E04.TJ (MSMg01no073_e04.g1)
ACCAG296603AG296604
length715700
length of high quality
(start - end)
63 (85 - 147)407 (77 - 483)
definitionCHROMAT_FILE: MSMg01no073_e04.b1 PHD_FILE: MSMg01no073_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005CHROMAT_FILE: MSMg01no073_e04.g1 PHD_FILE: MSMg01no073_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCTGCATATTTCGCTGTGTTAGAATGTGGCATCTCATCAAAG
TCCTCCCATTCCTCATCCTTCATCCTTTGATGGCCTTTATCCTTTTGCCT
TGCCTTACAGACATGAACTTGATCAATTCATTTTTAAAGCCATCATTTAT
CACTGTGGCTGGCATTTGCTATGTTGTGGAGACTTCTTTCTTTCACTCTT
CTCCACCCTTTTTCCACCTTTCAACTCCCCACCACTCGATAGGAGAGGAA
AAAGGATAAAGGTAGAGAGAGCACAGAGCAAGACTATAGAGACAACAGTG
GAAGGAGCAGGACTACATTCTGGTCTAGGCTTAATAGGTGAAACCAGTTC
TGTGCCCCTGCTGTTAGCTGTGGTCTTCCATCCCACAGCACGCATTGACC
TGCTATCCTGCTTCACTTGTTTTAACGTCATGTTTACTACAGGTTCTCGT
GTACGATTTATACAAATCTGAGTTCACAGCTGTTGTTCCATAGTTTTTCC
CTATCTCCTTGCTCCTTTATTGAAACTTATCTTCCTGGTGCTGGTGACTA
CTATTCCCACATTTTCCTGAGACTTCATTTCTACTCCGCCTGCTCCAACT
GCTATATTCCCGCTACTTGATTCCATCCTGGTTGTCACTTATCTCTTTAT
TCCTTCCCTCCCCAA
CTTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTGGATGTGAGGATGTTCT
ACTGGCGTGTTTGAAAAGAAATGCAGAGGCAGTCTACCCTGTGCCCTACA
TATTGAAAGTGCTTTGACACTTGTGGGTTCATACTCATTGTCTCATTTTA
TTCTCTGAAACAATCACATGGAATTAGAGGCTGTTATCTTTGCTCCTGTA
GCAGCTCGGGTTCAGTGGGGTAGAAGGAGTTGTTCCAGTGCACCTAGGGC
ACGGGCAAGAAGCCTTTGTCTAGACTGGGTTCCTTTCCTTTGGAGATGGT
ATTTACTAAGGGCTCCTTCAGGGCCAGGACTTGTCAATGGGAAGAAGAGC
GGGCATTTCTCTTTTTCCCCTTGAGGGAGGGAGGCCCTTGTGTCCTCTGG
ACGCTAATCTGCTTCTTTCTTTTTGTCTGGGACCTGATCAGATCCACCTG
GTAAGCCATGCAAGGAGTAAACCTATCATGGTTGGCTCTGCCCTCTAGAA
TCGGGATTCCCTGTGTGCTGTGGTCGGTACTGACCCCCTCATAGTCTTCA
GACTAGGTCCCTTTAACTTTCCTCCTGAGGGTAGGCAAGCACCATTGGCT
GGAATTGAACCTTAAAAATCTAATACGCAGGATTCCCTTCCCATTCCAGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e04.g1 MSMg01no073_e04.g1 CHROMAT_FILE:
MSMg01no073_e04.g1 PHD_FILE: MSMg01no073_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:16 2005
         (407 letters)



>mm_chr10_40797691_40798497
          Length = 807

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatattggatgtgaggatgttctactggcgtgtttgaaaagaaatgcagaggcagtcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatattggatgtgaggatgttctactggcgtgtttgaaaagaaatgcagaggcagtcta 260

                                                                       
Query: 61  ccctgtgccctacatattgaaagtgctttgacacttgtgggttcatactcattgtctcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgtgccctacatattgaaagtgctttgacacttgtgggttcatactcattgtctcat 320

                                                                       
Query: 121 tttattctctgaaacaatcacatggaattagaggctgttatctttgctcctgtagcagct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tttattctctgaaacaatcacatggaattagaggctgttatctttgctcctggagcagct 380

                                                                       
Query: 181 cgggttcagtggggtagaaggagttgttccagtgcacctagggcacgggcaagaagcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggttcagtggggtagaaggagttgttccagtgcacctagggcacgggcaagaagcctt 440

                                                                       
Query: 241 tgtctagactgggttcctttcctttggagatggtatttactaagggctccttcagggcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 tgtctagactgggttcctttcctttggagatggtatttactaagggctccttcggggcca 500

                                                                       
Query: 301 ggacttgtcaatgggaagaagagcgggcatttctctttttccccttgagggagggaggcc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggacttgtcaatgggaagaagagcgggtatttctctttttccccttgagggagggaggcc 560

                                                          
Query: 361 cttgtgtcctctggacgctaatctgcttctttctttttgtctgggac 407
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttgtgtcctctggacgctaatctgcttctttctttttgtctgggac 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)