BAC Information

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BAC

Clone NameMSMg01-073E05
Chromosome10 (Build37)
Map Location 97,191,212 - 97,191,523
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628256, 4930556N09Rik, EG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
Downstream geneEG667438, EG432494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E05.T7 (MSMg01no073_e05.b1)MSMg01-073E05.TJ (MSMg01no073_e05.g1)
ACCAG296605AG296606
length709700
length of high quality
(start - end)
314 (47 - 360)49 (371 - 419)
definitionCHROMAT_FILE: MSMg01no073_e05.b1 PHD_FILE: MSMg01no073_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005CHROMAT_FILE: MSMg01no073_e05.g1 PHD_FILE: MSMg01no073_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATATGCCCTCATGATGCCCTCAAGGTAGATTTAGTAACATTGA
TCACTGATAATAAATATTAATCGTGGGTAGGAACCTACTAACTCAAATTT
CAGTCATAGGGATTAGACAGAGATGACCACATTCCCTTTAGGGGCTTTCC
TGGAAGGGGGAGGGGAGTTTATATTTCAACTTAGGGGCAGCCAGCCATCA
TCTTTGCTGCTGTAAGCATGTAATACTACAGTATGTAAATGGAATGCAAA
GTAGGAGGTGGGCAAATGTGTAATATCCTAATGTGTGGTGAAATAAAGCA
CATTTTAAAGCCTTATTTGTGCACCCCCCGAGTTCAAGGCCAGCCTGGTG
TACAAAGTGAGTTCCAGGACAGACAGGACTACAGAGATAAACCCTGTCTC
AGAAAAAAAACAAAAAAAAAAACAAACAAAAAAAAAGAATAAATGTATAA
ATCATCAGAAAAGAGTTAAATTTTCTGTATATTGTGAACAAGTTACTAGA
ATTCTTGGATCCCTGGGTATCCAACCAGGGCTAAGATAGGCTAAGATTCA
TATTTGCTACTTAGTATTTAATGAATACATGTTTCTCAGAAACATGTTTC
GGTGCTTATTCTGTCCAGCAAATTGAACTCAGAATTAAGTTTAGAGCACA
CATTACTGA
NCCCCCATGAAGAGGGAGGCCGGGNGGCGCCTGTGTTCTGACTCGCGNGA
ACNANAGAAGTTTTCGGGAGGCGAGGCNCGCGCCNGCGACAAGGCNGGNN
NAACAGNNAGGCACAGCGGACCCCCGCGCCANCNNAAAGGGNGANGGCNC
NCGGCACACACGGCCCCCCNCAGAGANAACGGGCGGCACACAGGCGANGG
CNCGCAGCACGNACCGGCNNNCCACACNACCCCCNGGNCCCACACCAACN
ATGTTTATTAGAAANAGCTGGGCCGGGGGACCAGAAACNAGAAGCGACTC
TGGCCTGTGCCTGATGTTTTTTTTTTTAGAANAAGCCCGGCACCNGACCG
GGGCANCATTTCACACCCCCCCCTGAATCTTGTGGGTGTGGATGAGCCTG
CTCTGAGGGCATGAAAGTAGGAGAGTTGGCTCTGCCCCTTGCTGGCTGAG
GCATTGGATAGGCCAGCCAGGACAGAGCACCATATGGTGTGGGTGCGGGA
GAGCTGGCAGCATGACCTGCTCAGATACTTCATCCAGGACTTTGGCCTAT
CCTTACCTCTTCCCTACCAATGAATTGCATTAAGGGGTTGGCTCTACGGG
TACAAACACTAATGGAAATCCTTGACACTGCTCACCAACAGGATCTCCCA
CAAGATTTTTTTTTTTTGATCAGCGTCGATAGACCGCACAAGCCTTAGGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e05.b1 MSMg01no073_e05.b1 CHROMAT_FILE:
MSMg01no073_e05.b1 PHD_FILE: MSMg01no073_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:16 2005
         (314 letters)



>mm_chr10_97191009_97191723
          Length = 715

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaatt-caatatgccctcatgatgccctcaaggtagatttagtaacattgatcactgat 62
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattccaatatgccctaatgatgccctcaaggtagatttagtaacattgatcactgat 456

                                                                       
Query: 63  aataaatattaatcgtgggtaggaacctactaactcaaatttcagtcatagggattagac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aataaatattaatcgtgggtaggaacctactaactcaaatttcagtcatagggattagac 396

                                                                       
Query: 123 agagatgaccacattccctttaggggctttcctggaagggggaggggagtttatatttca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 agagatgaccacattccctttaggggctttcctggaagggggaggggagtttatatttca 336

                                                                       
Query: 183 acttaggggcagccagccatcatctttgctgctgtaagcatgtaatactacagtatgtaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acttaggggcagccagccatcatctttgctgctgtaagcatgtaatactacagtatgtaa 276

                                                                       
Query: 243 atggaatgcaaagtaggaggtgggcaaatgtgtaatatcctaatgtgtggtgaaataaag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atggaatgcaaagtaggaggtgggcaaatgtgtaatatcctaatgtgtggtgaaataaag 216

                       
Query: 303 cacattttaaag 314
           ||||||||||||
Sbjct: 215 cacattttaaag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 715
Length adjustment: 9
Effective length of query: 305
Effective length of database: 706
Effective search space:   215330
Effective search space used:   215330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)