BAC Information

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BAC

Clone NameMSMg01-073J05
Chromosome10 (Build37)
Map Location 62,744,089 - 62,744,635
singlet/doubletsinglet
Overlap geneHerc4
Upstream geneHk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik
Downstream geneSirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J05.T7 (MSMg01no073_j05.b1)MSMg01-073J05.TJ (MSMg01no073_j05.g1)
ACCAG296838AG296839
length691696
length of high quality
(start - end)
551 (44 - 594)323 (77 - 399)
definitionCHROMAT_FILE: MSMg01no073_j05.b1 PHD_FILE: MSMg01no073_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:41 2005CHROMAT_FILE: MSMg01no073_j05.g1 PHD_FILE: MSMg01no073_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTGTTCTGAGAATGTCTCACAAGGTGCCTCTAACTGGCTAAAAC
AGACCCCTGCTCCCTGGTGCTGGCAGTACACAAGTGCCACCATGCCTAAG
TTTCCACTTTCTCTCCTGATTTTAGTAGTTTGAATTATCTTTCTAAGTCA
ATCTAGTCTGTAGTTGATTAGATACTTTTAAAAGTTGTTTTGTTTTAAGT
CAGGCTCTCTGTTGCTCTCTGTCTGTCCTGGAACTCTGTATTGAGTTAAC
CAGACCTCTGCCTCCCAAATGGTAATACTAAAGACTTGTATCACCAGACT
TGGCAATTTAAGGCAAACAATAATAATTGTATCAGATTCTGCCAGTACAG
TCCTTACCCAGATGAGAGACAGATTCTCAGTACTTACTACTTATCTGTTT
TCCCAGAATCTACTGCCCAGTTCCTTTTTTGAAAACTTGACCTCCTTGCT
TTGTGATGACACAGTTGCTATAAATTATGTATTTATATCGCTTCTTAAAA
GTGCTGTCACATTAAACTTTTTTTTTAAGATTTACTTATTCATTATATGT
AAGTACACTGTTATCTGTCCTCAGACTCTCCAGAAGAGTGTATCACAATT
CATTACAGACGTCGTGAGTGATCATGTGATTCCTGGGAATA
TTCCCGATGCTGTGGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAGTACACATACAATATATATTTG
CAGGCATATGTAATGTGAATGAAATATACATTATATATGAAATACATAAT
TATATTTGTGTGTGGCATATATAATGTATATATGTGTGCATATATAATAT
ATGAAATATATAGTGTACATATATGTTAAACATATAATGTACATATATAC
ATGTACATATACACATATTTTTCCATATATGTGTGGAAAACATATATGTG
TGTATATATACATATATATGTATATATATGAAAAACCTCTATCTCTAGTC
TTTGACCCAGAATTATAATACTAAAAACTTGTCTACGGAGAAAATCTGAA
ATGAGACAAGAATTTAGCTCCACAGTGTGTGGCTTATCTAGAGAAACAGA
CTACCATATCCTCAATGAAGCCAAAGCAAGGCTTACTTCTTAGTAATAAC
TAATGAACTGTCATGCAAAAGGCACTGCAGTAACCATAGTTTTGGTGGCC
TGCCTTTGCTTGTTTTATTTGGGGGATCGGTCCTTACAATTACTGTACCC
ATGTCATCCTTTTTGGCTTCTTACGTGACTCTTGAATCTAACATCTGCCC
CAACCCACCCTACAAAGGTTCCACGAATTATACCTAATTTTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j05.b1 MSMg01no073_j05.b1 CHROMAT_FILE:
MSMg01no073_j05.b1 PHD_FILE: MSMg01no073_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:41 2005
         (551 letters)



>mm_chr10_62743885_62744835
          Length = 951

 Score = 1042 bits (539), Expect = 0.0
 Identities = 545/547 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtttgttctgagaatgtctcacaaggtgcctctaactggctaaaacagacccc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtttgttttgagaatgtctcacaaggtgcctctaactggctaaaacagacccc 264

                                                                       
Query: 65  tgctccctggtgctggcagtacacaagtgccaccatgcctaagtttccactttctctcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctccctggtgctggcagtacacaagtgccaccatgcctaagtttccactttctctcct 324

                                                                       
Query: 125 gattttagtagtttgaattatctttctaagtcaatctagtctgtagttgattagatactt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gattttagtagtttgaattatctttctaagtcaatctagtctgtagttgattagatactt 384

                                                                       
Query: 185 ttaaaagttgttttgttttaagtcaggctctctgttgctctctgtctgtcctggaactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaaagttgttttgttttaagtcaggctctctgttgctctctgtctgtcctggaactct 444

                                                                       
Query: 245 gtattgagttaaccagacctctgcctcccaaatggtaatactaaagacttgtatcaccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtattgagttaaccagacctctgcctcccaaatggtaatactaaagacttgtatcaccag 504

                                                                       
Query: 305 acttggcaatttaaggcaaacaataataattgtatcagattctgccagtacagtccttac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 acttggcaatttaaggcaaacaataataattgtatcagattctgccagtacagtccttac 564

                                                                       
Query: 365 ccagatgagagacagattctcagtacttactacttatctgttttcccagaatctactgcc 424
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 565 ccagatgagagacagattctcagtacttactacttatctgttttcccagaatctactgtc 624

                                                                       
Query: 425 cagttccttttttgaaaacttgacctccttgctttgtgatgacacagttgctataaatta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagttccttttttgaaaacttgacctccttgctttgtgatgacacagttgctataaatta 684

                                                                       
Query: 485 tgtatttatatcgcttcttaaaagtgctgtcacattaaactttttttttaagatttactt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtatttatatcgcttcttaaaagtgctgtcacattaaactttttttttaagatttactt 744

                  
Query: 545 attcatt 551
           |||||||
Sbjct: 745 attcatt 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)