BAC Information

Click to search

BAC

Clone NameMSMg01-074H22
Chromosome10 (Build37)
Map Location 76,558,900 - 76,559,046
singlet/doubletsinglet
Overlap geneCol18a1
Upstream geneSlc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
Downstream geneLOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074H22.T7 (MSMg01no074_h22.b1)MSMg01-074H22.TJ (MSMg01no074_h22.g1)
ACCAG297537AG297538
length723783
length of high quality
(start - end)
96 (199 - 294)147 (186 - 332)
definitionCHROMAT_FILE: MSMg01no074_h22.b1 PHD_FILE: MSMg01no074_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:52 2005CHROMAT_FILE: MSMg01no074_h22.g1 PHD_FILE: MSMg01no074_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGAGCCGCGGAAT
TCTGCTGTTTCCCATGAACCACAAGAGGGCGAGAGAGCCTTTCTCTAGAA
GTTCCTGCCGGAGGTGGGACATACTAGCAGACCTAGCAGGCACAATGGGA
AGAGTGGGTGGTCAGACCAGGGCTGAGCCCAGAAGTAGACAAAAGGGGTA
CAGACCACCCGGTCTTGTTCCTAGAGAACTCCTCCAAGATCAGGCTTTGG
TCCTCCATGCAGCTGGTGCCTGACCACTGAAGTCACCTACAAAGATAAGG
CTAAGATCCTCACTAGAGTAGTAGAATAAGCCCTATTTGATCTCATCCTA
TGTATATCTTGTATTTCTCAGGGCCACACTTAGAAATGTCCAAAGTTTTA
TACTCTGACTGACCGACTCATCTTACCCTCACACGCGCATTTCTGGTTTT
ATCTGTCCCCATCATGTATCAGATAAATGTCCCATTCCCTTGAGAGATTA
TTGTCTTGAGGCGCTATAGGTCCTGGGTCTGCTGTTCTCAGGAGTATGGA
GGTTCTCCTTTGATTCTGACAGACCCCTGTGGACGTTGGCGCCTCGTATC
GCACGTATTAGCATGCGTTAATAAGTCCGGAGCAGCACCGAATGTAGCCG
CTTTCCCGCCCCGCTCGTTGATAGTTACGTAGACACGTGACCAAGTCGCC
CCTTTTCGCTTTTACTTCATTTG
NNTTTTTTNNNNNNNCCCCCCCCCCCCTCCCCCCCCNNNCCCCCCACCCC
NCNNAACGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCACAGTCTACGTAGAGAGC
CACAGAGCCTCCGTCGACGCTGATCGCGAATTGTGTCCACTGCCCAATAA
ATGCAGGTAGGCGGAAGCTGGCTCCCGTCTGGGTCTGGCTGGCCCCAGGC
TCCGTGTAGAGCAATGAGATGTTTTGCTGTCCATCTCGGACCTCTGAGAG
CTTCACGCCCAGTGAGACTACCACCTGGGCAGCATCTGTGATGGTTAATA
TCACCCCTGCTGCCTCTGTGGCTGGTCTTACATGAAACAGCAGCGAAAAG
TCCCGGAATAAGAGTTTTGGGAAATGATACTGGGCCACTTGGTCACTGTT
GGAGTCTGGTCCAAAGATGTATGCCGGTCCGACGTGAGGGTCATCGATTT
GTGAGATCTTCTCAGGTAGGGGGTCTCCAAGGATCTGCATCAGCCCCACC
TCCTCTTAAACATTCTCTGCCTATAGAAAGACATCCCGTGAGTCGGTTAC
CCAGGATCCTATCTTAACATAGTGTTATTCTTGGTACACACTTCCCTCGA
ATACACCCACATGGGCTCTTCGGTTAAATATTTTTTTATATACGTTATGG
ATTGTTACGTTATTCATTTTGTGTATTCTCTCTCTCTCCCCATTTATACT
CCGTATAAAAAGCATAGATGTGTTTTAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_h22.g1 MSMg01no074_h22.g1 CHROMAT_FILE:
MSMg01no074_h22.g1 PHD_FILE: MSMg01no074_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:53 2005
         (147 letters)



>mm_chr10_76558700_76559246
          Length = 547

 Score =  277 bits (143), Expect = 3e-79
 Identities = 146/147 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactgcccaataaatgcaggtaggcggaagctggctcccgtctgggtctggctggccc 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccactgcccaacaaatgcaggtaggcggaagctggctcccgtctgggtctggctggccc 260

                                                                       
Query: 61  caggctccgtgtagagcaatgagatgttttgctgtccatctcggacctctgagagcttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggctccgtgtagagcaatgagatgttttgctgtccatctcggacctctgagagcttca 320

                                      
Query: 121 cgcccagtgagactaccacctgggcag 147
           |||||||||||||||||||||||||||
Sbjct: 321 cgcccagtgagactaccacctgggcag 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)