BAC Information

Click to search

BAC

Clone NameMSMg01-075D01
Chromosome10 (Build37)
Map Location 76,560,774 - 76,561,219
singlet/doubletsinglet
Overlap geneCol18a1
Upstream geneSlc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
Downstream geneLOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075D01.T7 (MSMg01no075_d01.b1)MSMg01-075D01.TJ (MSMg01no075_d01.g1)
ACCAG298067AG298068
length689676
length of high quality
(start - end)
303 (66 - 368)446 (71 - 516)
definitionCHROMAT_FILE: MSMg01no075_d01.b1 PHD_FILE: MSMg01no075_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:48 2005CHROMAT_FILE: MSMg01no075_d01.g1 PHD_FILE: MSMg01no075_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGAATTC
ATTTTGTATACTCAACTGAGTCTTTTTGTTTTAATATTTTATTTATTCCT
TGAAGATTCCATCCTAGCATGCACCCCCAGTACCATCTCAAATCCATGTC
CCCAATTTGTTGTTGATGATGCTATTGTTATTAATAACCCCCTGGGTCCA
GTTAGTCTTGTCCACATGTACATGGGTGTGAGTCCAGCCACAGGGGCATG
GGAAACGTCCACAGAAGAGAGTTTCTCTACAACCGTCAACTGCTAACTTT
GCCCCTCTGCCCCTCCCCCATCCCTGTCGTCTTTTTGACTGGCTTGATCT
TGTGCATGCCTTGTGCTGTAGCCACAGCTGCTGTGGTTTATCTGTGCAGC
AACAGTGTCACGAGAAATCTGCTCTTCAACTGTGAACACTTACACTCTGA
CCACTCTTCTGCCATGCATGCTCTCTCCACCTTGCATGTCTCCAGTTTTA
CACAGATGTGTCAAGCACAGTTACCCATACTTAAACCTTTGACCAAATAT
AATTCTATTAACTCTGACTTGCCTGTCTGACTCTCTCTCTCTCTCTCTGC
TGCTAATTTTCCTTTTTTAACCTTCTATATCCTTTTTACACCTTTTTTCT
TGAATAAACTTGAATCATTTATCTTATTCTATTTCTTTC
CTCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTTTTGGCTCTGTTGAGAGGAGCTGCCAA
ATGCCAGGGCCATAAGATCACCAGCTCTCTTCTCTGGTTACAGCAATGGC
GAGCGGGGAAGGGCCTGGGTGCCTATGCCAGGAAACCCATTCCCCTGTAA
GAAGCAAAGCCTGTGCCATGCTCTGAGAGGGCTGATGCAGGAGGCTGGCC
CCTCTGCATGCTAAGGCCTGTTGAGTCACTCACATGAGCTGAGATCCAAG
ATGAGCTGAGTCCTACATGGTTAACGCCCACCTTCCCAAAAGTGAGCAGG
CATAGTTCTTTCTGAAAGCCTATATTTTAATGCACATGCTTCATATAGAA
CCAACTGCAGTCAGCATCCCCCCCCCCCCCGAAAAGCACAGCCAAGGCTT
GGCTCTGGAGGGACCAGCAGCAAGAACGTCTGGTGCTCCCCAACTGACTG
CACCAGGCTCCCGGTGGTACGGGAGCCCCTGACAGCCTCCCTCCCTGGAC
TACAGCCAATCTATTCTCTTCACAGGCAACCTCACCAAGCAGGACCTGGT
TTGAGAAAATTGCAGGCAAACGGTGCAGCCGTTTGGCAAGGGTACCCATC
CACAGGGGTTCGTAATGTGCAATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_d01.g1 MSMg01no075_d01.g1 CHROMAT_FILE:
MSMg01no075_d01.g1 PHD_FILE: MSMg01no075_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:48 2005
         (446 letters)



>mm_chr10_76560574_76561419
          Length = 846

 Score =  855 bits (442), Expect = 0.0
 Identities = 445/446 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttttggctctgttgagaggagctgccaaatgccagggccataagatcaccagctctct 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ttttttggctctgttgagaggagctgccaaatgccaggaccataagatcaccagctctct 260

                                                                       
Query: 61  tctctggttacagcaatggcgagcggggaagggcctgggtgcctatgccaggaaacccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctggttacagcaatggcgagcggggaagggcctgggtgcctatgccaggaaacccat 320

                                                                       
Query: 121 tcccctgtaagaagcaaagcctgtgccatgctctgagagggctgatgcaggaggctggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccctgtaagaagcaaagcctgtgccatgctctgagagggctgatgcaggaggctggcc 380

                                                                       
Query: 181 cctctgcatgctaaggcctgttgagtcactcacatgagctgagatccaagatgagctgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctgcatgctaaggcctgttgagtcactcacatgagctgagatccaagatgagctgag 440

                                                                       
Query: 241 tcctacatggttaacgcccaccttcccaaaagtgagcaggcatagttctttctgaaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctacatggttaacgcccaccttcccaaaagtgagcaggcatagttctttctgaaagcc 500

                                                                       
Query: 301 tatattttaatgcacatgcttcatatagaaccaactgcagtcagcatccccccccccccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatattttaatgcacatgcttcatatagaaccaactgcagtcagcatccccccccccccc 560

                                                                       
Query: 361 gaaaagcacagccaaggcttggctctggagggaccagcagcaagaacgtctggtgctccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaagcacagccaaggcttggctctggagggaccagcagcaagaacgtctggtgctccc 620

                                     
Query: 421 caactgactgcaccaggctcccggtg 446
           ||||||||||||||||||||||||||
Sbjct: 621 caactgactgcaccaggctcccggtg 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)