BAC Information

Click to search

BAC

Clone NameMSMg01-075E24
Chromosome10 (Build37)
Map Location 101,318,376 - 101,318,495
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075E24.T7 (MSMg01no075_e24.b1)MSMg01-075E24.TJ (MSMg01no075_e24.g1)
ACCAG298161AG298162
length718715
length of high quality
(start - end)
345 (73 - 417)623 (68 - 690)
definitionCHROMAT_FILE: MSMg01no075_e24.b1 PHD_FILE: MSMg01no075_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:56 2005CHROMAT_FILE: MSMg01no075_e24.g1 PHD_FILE: MSMg01no075_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATCCGCGGAATTCT
CCATAGAAATACCCTGAACTATACATGAAATAAATATTCCATATTTTAAC
CATCAGTGAAATGCAAATCAAAATCACTTTGAGATTCTATCTTACACCTG
TCAGAATGACTAGGATTAAAAACACAAGTGGCAGGCAGCTCAGACTGACT
AGCAAGTGAAATAAGAGGATCATGCCTTCATTCTTAGTGGAAGTACAAAC
TTGTCCAGCTACCATAGAAATCTATATGCTCATTTCTTGGAATATTGGTA
TGTGTTTAATTTAGAGTCCAGCTGCACCATGCTTGGGCAAATAACCAAAG
GACCATCATAATATCTAGAAATTGGGAGCAAGCTAGATATACCTTTTCAA
AAGAATGGATAGAGAACACCCCCCCACATTTACACAATACAATATTACTC
AGCTGATATATATATCCTGAAAATTGCATCCAAATAGATTGAACTGGGAA
AATGTTTCCAATTGAGATAACCCATACTCAGACAGATAAATATGGTATAC
ATTCACTTATATGTGGATATTGGTCTTTAAATACATGATGACCAAGCTAC
TATCTGTAGAAGAAGAGAGGTTAGAAGCAGATGAATAATTTGGGCCGGCG
TGACATGTTTCTCCTTGCGAGGAGAAAACCGAACAGATTTTGCATGTGGA
CTGCCGTTAGCTGGGGAC
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTTAACAGTCTGCTTTA
CGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGAT
CTTCCCTGCGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGGATTTC
AGCACCAATTCTTAATCGCGTTCTCACGCCCGACGAGGAAGAACACAACA
GACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTTTGGAGCCA
GGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAATGAAAGCCCCTCAATAA
TGAAACCGAAACCCCTTCCCTATTTAGGAGAGTTATATTTCGCCTAGGAC
GCATCACTCCCTGACCGCCTGCAGCCCATGGCCGAGCTGACGTTCACGGG
AAAAGCAGAGTACAAGTAGTCATAAGATACCCTTGGCACATGCGCAGATT
ATTTGTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCG
AATGTGGGGGCGGCTCCCAACAGAGGTTTAAGTCATGTAGTATTTGGTTT
TAATTTTTTTTTGGCTTGCTGAAATTTGACAGGGAATGTATCTACATGTG
ACATTTAACTTTTGGTTCATTATGAATAGAGTGATAATTTTTCTTGCATA
TAAATAAAACATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_e24.g1 MSMg01no075_e24.g1 CHROMAT_FILE:
MSMg01no075_e24.g1 PHD_FILE: MSMg01no075_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:56 2005
         (623 letters)



>mm_chr10_101317671_101318695
          Length = 1025

 Score =  213 bits (110), Expect = 4e-59
 Identities = 117/120 (97%), Gaps = 2/120 (1%)
 Strand = Plus / Plus

                                                                       
Query: 506 gaggtttaagtcatgtagtatttggttttaattttttttt--ggcttgctgaaatttgac 563
           ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||
Sbjct: 706 gaggtttaagtcatgtagtgtttggttttaatttttttttttggcttgctgaaatttgac 765

                                                                       
Query: 564 agggaatgtatctacatgtgacatttaacttttggttcattatgaatagagtgataattt 623
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agggaatgtatctacatgtgacatttaacttttggttcattatgaatagagtgataattt 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1025
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1015
Effective search space:   622195
Effective search space used:   622195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)