BAC Information

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BAC

Clone NameMSMg01-075J19
Chromosome10 (Build37)
Map Location 51,678,189 - 51,678,788
singlet/doubletsinglet
Overlap genenone
Upstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075J19.T7 (MSMg01no075_j19.b1)MSMg01-075J19.TJ (MSMg01no075_j19.g1)
ACCAG298386AG298387
length672675
length of high quality
(start - end)
588 (43 - 630)601 (75 - 675)
definitionCHROMAT_FILE: MSMg01no075_j19.b1 PHD_FILE: MSMg01no075_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:19 2005CHROMAT_FILE: MSMg01no075_j19.g1 PHD_FILE: MSMg01no075_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAATTTGCTCCAATAACTTTAGGAAGAAAGTTTTTAGAGATGGTCTT
AGTTGCTAGAAAGTTGTAACAAAGTTAGAATCAAGAATAGAATGTGTCCA
CTCCTCAGAAAAGTAAGTAAAAGCCACATAATAAGAAATACAATGAGCTA
TCATAACCACACTAAAAGAGAAATAGACTTGGGAAAATTTTGTGTTCAAG
GAAAAATAAGTCCCAGGATAAAGTCGCAGGTGTGTGCTATATCAGGCAAG
GCCATATAAAAACTGTTGCTTTGAACTTTTAATGAGTATATTATAATGAA
ACACCACTTTGAACTTAATATCAACATCCTTCTCTAACTCCAGTTTTATG
CAACACTTTTATCTGAGATAATTTTCTAAAGAACTTTTGTCTAAGAAGGT
ATAAAAAGACCAGAAAAGGGAAATAAAGTGGTTTGTGGAATGGTTTGGCT
TGAGGGGCTTTGCCCCCTGCATCCATCTATTAACTCATCCATCCATCCAT
CCATCCATCCATCTACCCATCTATCCCAATGTGTATGTTTGTTTGTCTAT
ATGTTTCTGTATCAAGTACTTGTGTATATGTATAAGCATGCATGAATACT
TGTGTGGTTGATTGTGACAGAC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATACACCCGAGATCATTTGCAACTA
TTTATGCTTGGCTAGAAATTTAGGCTAAACTCCAAACAGGGTAAGAAACA
TAATGATCAATATTTCTGATGCAATTGATGAGAAAAATGATTTTTAGGAA
AATGTTTGAGTAAACTTTTTAAATGTATTAGTAAAATTTAGAGGGCATAG
AGGAGAAGACTGACAGAAATATGAAATTTGAAAGTTACAAAACAAAAGAC
GGACTAGGAGAAACACAATAATACAATACACCAATGGTGTCTGACAAGAT
TGAGCGATAATAAATATACCAGAGAAGAAAACACTGGAACAGATGAAGAT
ATGATGGGCAATTCTCACAAACGACAAAAAGCTAAGTATATGAAAGCCTG
TTGAACATCATCAATAATTGGGGGATTTCAACAGGAAAGGGTATTTCCTA
CCAACTCTGTCAATCATTAAATGTATAAGCTTTGCGCTGGAGAGATGGCT
CAGCATTTAAACCAGGTACCACACTGTACCTGTAGAAACCTGAGTTTGGT
TCTTAGCCACCATGCAACTTCACCTCCAGGAGATCTGGCATTCTTTTCTG
AACTTTGTGGACATCTGCACTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_j19.g1 MSMg01no075_j19.g1 CHROMAT_FILE:
MSMg01no075_j19.g1 PHD_FILE: MSMg01no075_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:19 2005
         (601 letters)



>mm_chr10_51678129_51679128
          Length = 1000

 Score = 1110 bits (574), Expect = 0.0
 Identities = 595/602 (98%), Gaps = 3/602 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 601

                                                                       
Query: 61  aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 541

                                                                       
Query: 121 taggaaaatgtttgagtaaactttttaaatgtattagtaaaatttagagggcatagagga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taggaaaatgtttgagtaaagtttttaaatgtattagtaaaatttagagggcatagagga 481

                                                                       
Query: 181 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 421

                                                                       
Query: 241 acaataatacaatacaccaatggtgtctgacaagattgagcgataataaatataccagag 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acattaatacaatacaccaatggtgtctgacaagattgagcgataataaatataccagag 361

                                                                       
Query: 301 aagaaaacactggaacagatgaagatatgatgggcaattctcacaaacgacaaaaagcta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 aagaaaacactggaacagatgaagatatgatgggcaattctcaaaaacgacaaaaagcta 301

                                                                       
Query: 361 agtatatgaaagcctgttgaacatcatcaataattgggggatttcaacaggaaagggtat 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 300 agtatatgaaagcctgttgaacatcatcaataatt-ggggatttcaacaggaaagggtat 242

                                                                       
Query: 421 ttcctaccaactctgtcaatcattaaatgtataagctttgcgctggagagatggctcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcctaccaactctgtcaatcattaaatgtataagctttgcgctggagagatggctcagc 182

                                                                       
Query: 481 atttaaaccaggtaccacactgtacctgtagaaacctgagtttggttcttagcca-ccat 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 181 atttaaaccaggtaccacactgtacctgtagaaacctgagtttggttcttag-cacccat 123

                                                                       
Query: 540 gcaacttcacctccaggagatctggcattcttttctgaactttgtggacatctgcactta 599
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 122 gcaacttcacctccaggagatctggcattctcttctgaactttgtggacatctgcactta 63

             
Query: 600 tg 601
           ||
Sbjct: 62  tg 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1000
Length adjustment: 10
Effective length of query: 591
Effective length of database: 990
Effective search space:   585090
Effective search space used:   585090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)