BAC Information

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BAC

Clone NameMSMg01-075O03
Chromosome10 (Build37)
Map Location 62,330,146 - 62,488,542
singlet/doubletdoublet
Overlap geneCxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik
Upstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
Downstream genePbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O03.T7 (MSMg01no075_o03.b1)MSMg01-075O03.TJ (MSMg01no075_o03.g1)
ACCAG298593AG298594
length708705
length of high quality
(start - end)
432 (50 - 481)447 (80 - 526)
definitionCHROMAT_FILE: MSMg01no075_o03.b1 PHD_FILE: MSMg01no075_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005CHROMAT_FILE: MSMg01no075_o03.g1 PHD_FILE: MSMg01no075_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,488,170 - 62,488,542)(62,330,146 - 62,330,592)
sequence
NTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACCTACCTTACCATGTTGAAAGAGTGAAAGGTAAAGGAGC
CATGTAATTAAAACCCAATAGAAGAAAGGCCCTGGGAAGGTTTCATCCTA
AGAGTTCAGCTTGGAGTACTGCTAATAAGCCAGTTCCCTTTAGGTTTGTT
ACCCCCTCCACCCCACCGCCCAGAGGCAGTGTTTCTCAGTGTAGCCCTGG
CTGTCCAGGAACTCACTCTGAAGACCAGGCTGGCCTCCAACAAAGAGATC
CAACTGCCTCTGCCTCCCGAGTGCTGGTATTAAAGGTGTGCACCACTACC
CAGCTAAACCAGTTACTTTTTTAAAAAAGAGAACATACTTTGGGCTCTAA
ATCAACCCCCAGCTATTAAAAGGAGGGGGTGGGGTAACTTTAGGGGATTA
AAGTAACAATAAAATAACCAAGCTTCAGCAAGTGTCTGGCCAGTAAGCCA
CTAACTTGTCACCACATAAAAGAGTTTAGTGTTATCAAGTGCAATTATTT
TCACTCTTGCGGGACTAGGGACTGCATCTGCGAATTACCACTTTGTAAGG
CTATGGACACTCCGATGCTCCGGAGTTCAAGGACATCTTTGGCCTACCCC
GAAACCAAGATCACGGAACTGCTTTACCATGCCCTTTTCAGGAAGTACTT
TTCCAATC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTTTGTTAATATTTGTT
AAATATTTTGTTAAATATCCATACCAAAGCCAAGGGAATCTGACCTAACC
ATGACAGCAGTGCAATACAGCAAACACTGAGAACTGCTGTGGACTCAGCG
TGTGGCACACACCTTAACCCCAGCACTCAGGAGACAGAGGCAGACAGATC
CACGAGAGTTCGAGGCCAGCCTGGTCTACACAGGGAGTTCCAGGACAGGG
AGAGCTACATAGTGAGACCCTGTCTGAGAGGTTGGGAGGGGTTGGCTCTG
TGGGGAACCAAAGCGACCAAGAAATAGCTGAAAACGCATGGCCATGTCAG
TCTGGGTCGCGTCTGTTCAGGGTGGAGAACAGGTGCACGGGTGGACCACA
CTTAGCCATCATCCAGCTGATGTCAACTTTGAAGAACATCCCCATTCCTT
TTTCTATCATCATCATCATTTTGCCTGGCTGTGTTTGTGTTGGCACACTC
TGCACAGCATATGGAGCTCAAGGAGAATTAGTCTGCGGAGCTAACTGTCT
CCCACTATTAGAGTCCCAGGTATTAAATCTAGTTCAGGATGAAGCCTTTC
TAAACCCTCTGTGCCACCACCCAGGATCTGCCCAGAGCATCTTGCCCGGG
TACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o03.b1 MSMg01no075_o03.b1 CHROMAT_FILE:
MSMg01no075_o03.b1 PHD_FILE: MSMg01no075_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:40 2005
         (432 letters)



>mm_chr10_62488170_62489001
          Length = 832

 Score =  690 bits (357), Expect = 0.0
 Identities = 369/373 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacctaccttaccatgttgaaagagtgaaaggtaaaggagccatgtaattaaaa 64
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattccacctacccaatcatgttgaaagagtgaaaggtaaaggagccatgtaattaaaa 314

                                                                       
Query: 65  cccaatagaagaaaggccctgggaaggtttcatcctaagagttcagcttggagtactgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cccaatagaagaaaggccctgggaaggtttcatcctaagagttcagcttggagtactgct 254

                                                                       
Query: 125 aataagccagttccctttaggtttgttaccccctccaccccaccgcccagaggcagtgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aataagccagttccctttaggtttgttaccccctccaccccaccgcccagaggcagtgtt 194

                                                                       
Query: 185 tctcagtgtagccctggctgtccaggaactcactctgaagaccaggctggcctccaacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tctcagtgtagccctggctgtccaggaactcactctgaagaccaggctggcctccaacaa 134

                                                                       
Query: 245 agagatccaactgcctctgcctcccgagtgctggtattaaaggtgtgcaccactacccag 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 133 agagatccaactgcctctgcctcccgagtgctgggattaaaggtgtgcaccactacccag 74

                                                                       
Query: 305 ctaaaccagttacttttttaaaaaagagaacatactttgggctctaaatcaacccccagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  ctaaaccagttacttttttaaaaaagagaacatactttgggctctaaatcaacccccagc 14

                        
Query: 365 tattaaaaggagg 377
           |||||||||||||
Sbjct: 13  tattaaaaggagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no075_o03.g1 MSMg01no075_o03.g1 CHROMAT_FILE:
MSMg01no075_o03.g1 PHD_FILE: MSMg01no075_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:40 2005
         (447 letters)



>mm_chr10_62329946_62330792
          Length = 847

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttttgttaatatttgttaaatattttgttaaatatccataccaaagccaagggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttttgttaatatttgttaaatattttgttaaatatccataccaaagccaagggaat 260

                                                                       
Query: 61  ctgacctaaccatgacagcagtgcaatacagcaaacactgagaactgctgtggactcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgacctaaccatgacagcagtgcaatacagcaaacactgagaactgctgtggactcagc 320

                                                                       
Query: 121 gtgtggcacacaccttaaccccagcactcaggagacagaggcagacagatccacgagagt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 gtgtggcacacagcttaaccccagcactcaggagacagaggcagacagatccaagagagt 380

                                                                       
Query: 181 tcgaggccagcctggtctacacagggagttccaggacagggagagctacatagtgagacc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgaggccagcctggtctacacatggagttccaggacagggagagctacatagtgagacc 440

                                                                       
Query: 241 ctgtctgagaggttgggaggggttggctctgtggggaaccaaagcgaccaagaaatagct 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ctgtctgagaggttgggaggggttggctctgtggggaaccaaatcgaccaagaaatagct 500

                                                                       
Query: 301 gaaaacgcatggccatgtcagtctgggtcgcgtctgttcagggtggagaacaggtgcacg 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaacgcatggccatgtctgtctgggtcgcgtctgttcagggtggagaacaggtgcacg 560

                                                                       
Query: 361 ggtggaccacacttagccatcatccagctgatgtcaactttgaagaacatccccattcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtggaccacacttagccatcatccagctgatgtcaactttgaagaacatccccattcct 620

                                      
Query: 421 ttttctatcatcatcatcattttgcct 447
           |||||||||||||||||||||||||||
Sbjct: 621 ttttctatcatcatcatcattttgcct 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)