BAC Information

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BAC

Clone NameMSMg01-076N20
Chromosome10 (Build37)
Map Location 102,763,235 - 102,900,010
singlet/doubletdoublet
Overlap geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
Downstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076N20.T7 (MSMg01no076_n20.b1)MSMg01-076N20.TJ (MSMg01no076_n20.g1)
ACCAG299340AG299341
length712724
length of high quality
(start - end)
156 (87 - 242)139 (77 - 215)
definitionCHROMAT_FILE: MSMg01no076_n20.b1 PHD_FILE: MSMg01no076_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:59 2005CHROMAT_FILE: MSMg01no076_n20.g1 PHD_FILE: MSMg01no076_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,899,855 - 102,900,010)(102,763,235 - 102,763,373)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATCTTATATGCGATGAAAGATATTGTTTGTTTGTTAGTAGGCTCATTAT
TCCAGGTAAAGGGAAGCAATAAAATTGACCAAATACTTCTCAGCATTTCA
GTAGTCATTTGGTTGTAACCAAAGACAGGCATACCTTTATGGATGCTCAA
ATTTCATCAGAGTTTTATCAAAGGAAGAAGAGAAAACTCCATTCTAATTA
GAAGCAACGCCTTCAGATTGGGGATATAAAAGCTGAATATGTTCAATACA
TGTTAAGGAATAGAGACAATCAGTCAATGCAGATTCAAATATGGTTCCTC
GTAATCTTTATTCCTTTAAGGCAACAAATTAAAATCTTATTATTCCTGAC
TATAAATTCAAATCATTACTGAACAATGCATTTAATGTACTATAAATTGG
CCAATCCCTTATAATTATGTAAGCAGGACAAATACCACCTCCCTGTCATT
CTTCCTTCCTTGCACATGTTTGACAATTGTATGATTAAAAATGCTACAGG
CTTTAGTCTATACCGTAACAGAATGCAACGCTCTGGCTTTAGCTTCCCCT
ATTACAGCCCTCCTCTCATCTTTTATTTCTGTTGCACCTGGCCTTGCATG
CGAACACTCTTAATTCGCCCCTATTACCACACTGTGACTGACCAAGTTTT
ACCCTCTACCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTGTCTTATTTGAATTTCATCTAAG
CAGATTATTTTATGCATTGGTAGATTTTTTCATGTCAATTAAGAAAATAA
ACATAAAACATTTTGAAAACTTAAGTACATATTGAATATTAATTATTTGG
CAGTTAATCAGCCACTAGCCGTGATACATTTTAATCCTTTCTCTTTTGTT
TCCCTCAGTTCCAAATTTCTGAACTTCATCATCAGCTTTTTTTTGACAGA
CTGTTTCTTGACTCTTTACCTGCATATTTCTCATCACTAATGAGTATATT
TGATAGCTGCTGCGTCTCCAGAGCTTTCTATGCATTGCACTTTAGAGAAG
CCTAGCTTGCAATCTTTGCCTATAAATATGTCACTATACTTATGAATACA
TACTGAGTCTACGCGTATCTTACACATCCACATATGTATCTCCAATCTTA
CCATCTCATTCTTTCCAGCCCTGATCTGTTCATTGACAACTCCGCCCGTT
GCTCACAACCTCGCATTGCTCCCCTTTGCCTCTGTACGCAGCCGCATTCG
ATCCTTCTTTGCTCCACTTACCGCGCCCTTTGCTTCTTCTTCTCCCCCCC
CCGCATTCCTATGTCGTCCCATACCCTTATATCTGTTCCTCTTCCTCACC
ATTTCCCCATTTTCCTACTTTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_n20.b1 MSMg01no076_n20.b1 CHROMAT_FILE:
MSMg01no076_n20.b1 PHD_FILE: MSMg01no076_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:59 2005
         (156 letters)



>mm_chr10_102899655_102900210
          Length = 556

 Score =  286 bits (148), Expect = 4e-82
 Identities = 154/156 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaggctcattattccaggtaaagggaagcaataaaattgaccaaatacttctcagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agtaggctcattattccaggtaaagggaagcaataaaattgaccaaatacttctcagcat 297

                                                                       
Query: 61  ttcagtagtcatttggttgtaaccaaagacaggcatacctttatggatgctcaaatttca 120
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 296 ttcagtagtcatttggttgtaaccaaagacaggcattcctttatggatgcccaaatttca 237

                                               
Query: 121 tcagagttttatcaaaggaagaagagaaaactccat 156
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcagagttttatcaaaggaagaagagaaaactccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no076_n20.g1 MSMg01no076_n20.g1 CHROMAT_FILE:
MSMg01no076_n20.g1 PHD_FILE: MSMg01no076_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:00 2005
         (139 letters)



>mm_chr10_102763035_102763573
          Length = 539

 Score =  261 bits (135), Expect = 1e-74
 Identities = 138/139 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcttatttgaatttcatctaagcagattattttatgcattggtagattttttcatgtc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcttatttgaatttcatctaagcaaattattttatgcattggtagattttttcatgtc 260

                                                                       
Query: 61  aattaagaaaataaacataaaacattttgaaaacttaagtacatattgaatattaattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattaagaaaataaacataaaacattttgaaaacttaagtacatattgaatattaattat 320

                              
Query: 121 ttggcagttaatcagccac 139
           |||||||||||||||||||
Sbjct: 321 ttggcagttaatcagccac 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)