Query= MSMg01no078_c11.b1 MSMg01no078_c11.b1 CHROMAT_FILE:
MSMg01no078_c11.b1 PHD_FILE: MSMg01no078_c11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
(498 letters)
>mm_chr10_68277840_68278737
Length = 898
Score = 389 bits (201), Expect = e-112
Identities = 213/217 (98%), Gaps = 1/217 (0%)
Strand = Plus / Minus
Query: 5 gaattcttttgatttccttgcttttagatagtaagtatacttaggaataatactgatttg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaattcttttgattttcttgcttttagatagtaagtatacttaggaataatactgatttg 260
Query: 65 tataagagtacacattctcattcatgaatgcagtattgtatattatatatattctttttt 124
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 259 tataagagtacacattctcattcatgaatgcagtagtgtatattatatatattctttttt 200
Query: 125 ttctttcaagacagggtttctctgtgtagtcctggctggcctcaaactcagaaatctgcc 184
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 199 t-ctttcaagacagggtttctctgtgtagtcttggctggcctcaaactcagaaatctgcc 141
Query: 185 tgcctctgcctcccaagtgctgggattaaaagcatgc 221
|||||||||||||||||||||||||||||||||||||
Sbjct: 140 tgcctctgcctcccaagtgctgggattaaaagcatgc 104
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space: 433344
Effective search space used: 433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_c11.g1 MSMg01no078_c11.g1 CHROMAT_FILE:
MSMg01no078_c11.g1 PHD_FILE: MSMg01no078_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
(404 letters)
>mm_chr10_68120763_68121561
Length = 799
Score = 685 bits (354), Expect = 0.0
Identities = 387/406 (95%), Gaps = 17/406 (4%)
Strand = Plus / Plus
Query: 1 attatttgagatgctaactttttattttcaatattatatgtctcctaataataatagtat 60
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attatttgagatgctaactttttattttcaatattatac-tctcctaataataatagtat 259
Query: 61 gaatgatttctttctattctcagtgatggtatgtgtagaaattagaatttggttgtggca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaatgatttctttctattctcagtgatggtatgtgtagaaattagaatttggttgtggca 319
Query: 121 atatatgacagaaacatgaagttttgcctgattttgcatgtgaatacttacaaggatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atatatgacagaaacatgaagttttgcctgattttgcatgtgaatacttacaaggatcag 379
Query: 181 ataaatgcaaaa--aaaaaaaaaaaccaaattaagcaatgtaggacataaaaatgccagg 238
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 380 ataaatgcaaaaggaaaaa------ccaaattaagcaatgtaggacataaaaatgccagg 433
Query: 239 acattcactattttatatattttaccaaatttatttatttatttatttatttatttattt 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acattcactattttatatattttaccaaatttatttatttatttatttatttattta--- 490
Query: 299 acttatttatttatttatttatttttaaacttaatttaaaaatgttgccaataaaaaaag 358
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 -cctatttatttatttattt----ttaaacttaatttaaaaatgttgccaataaaaaaag 545
Query: 359 ccacacatcagaggttcctcaaaatataatattgattaacaccata 404
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ccacacatcagaggttcctcaaaatataatattgattaacaccata 591
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 799
Length adjustment: 9
Effective length of query: 395
Effective length of database: 790
Effective search space: 312050
Effective search space used: 312050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
