Query= MSMg01no078_j10.b1 MSMg01no078_j10.b1 CHROMAT_FILE:
MSMg01no078_j10.b1 PHD_FILE: MSMg01no078_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:57 2005
(274 letters)
>mm_chr10_95184007_95184680
Length = 674
Score = 474 bits (245), Expect = e-138
Identities = 266/273 (97%), Gaps = 2/273 (0%)
Strand = Plus / Plus
Query: 3 gaattcagatccttctcaccgtcatccttgcagggcaaggtctctacagatggagtgatc 62
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagatccttcagaccgtcatccttgcagggcaaggtctctacagatggagtgatc 262
Query: 63 cctccagccccaccaaaggaaagctaataatcagggtccaattacaccagtgtaaggggc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cctccagccccaccaaaggaaagctaataatcagggtccaattacaccagtgtaaggggc 322
Query: 123 agaacaagcaaagagtcaataaatacaaatcagcccagggacgggcggcagtggaagcca 182
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 agaacaagcaaagagtaaataaatacaaatcagcccagggatgggcggcagtggaagcca 382
Query: 183 ttaccggtttggagagacagagatgttgatgctacca-gagttgagacacggaggctaac 241
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 383 ttaccggtttggagagacagagatgttgatgctat-atgagttgagacacggaggctaac 441
Query: 242 aacagagactggagcctataggacacaaggccc 274
|||||||||||||||||||||||||||||||||
Sbjct: 442 aacagagactggagcctataggacacaaggccc 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space: 176225
Effective search space used: 176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_j10.g1 MSMg01no078_j10.g1 CHROMAT_FILE:
MSMg01no078_j10.g1 PHD_FILE: MSMg01no078_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:57 2005
(327 letters)
>mm_chr10_95368361_95369087
Length = 727
Score = 563 bits (291), Expect = e-165
Identities = 315/325 (96%), Gaps = 4/325 (1%)
Strand = Plus / Minus
Query: 3 aagtggtaaggggcttacttacagtggaaggccctgagttcaatccttaaggcaaacaaa 62
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 521 aagtggtaaggggcttacttacagtgccaggccctgagttcaatccttaaggcaaaca-- 464
Query: 63 acaaacaaacaaacaaaaacaataaaactaaaacaatatcagtcctaggctagagtttta 122
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 463 --aaacaaacaaacaaaaacaataaaactaaaacaatatcagtcctaggctggagtttta 406
Query: 123 gccctgctggtagaatccttcttagtatgtgccaaagctctgggtttgatctccatatgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gccctgctggtagaatccttcttagtatgtgccaaagctctgggtttgatctccatatgt 346
Query: 183 catacacacagcacagcagtgcatacctatgaccacaacacacagcagcgcatacctatg 242
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 345 catacacacagcacagcagtgcatacctatgaccccaacacacagcagcgcatacctatg 286
Query: 243 atcccagcaattgggaagagaaccagtagttcaaaatcgttctcacttacatagtgagtt 302
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 285 atcccagcaattgggaagagaaccagtagttcaaagtcattctcacttacatagtgagtt 226
Query: 303 tgagagttcaagaacagcctaagat 327
|||||||||||||||||||||||||
Sbjct: 225 tgagagttcaagaacagcctaagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
