BAC Information

Click to search

BAC

Clone NameMSMg01-078K15
Chromosome10 (Build37)
Map Location 126,684,587 - 126,684,812
singlet/doubletsinglet
Overlap geneKif5a
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c
Downstream geneDctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078K15.T7 (MSMg01no078_k15.b1)MSMg01-078K15.TJ (MSMg01no078_k15.g1)
ACCAG299946AG299947
length728722
length of high quality
(start - end)
236 (37 - 272)253 (74 - 326)
definitionCHROMAT_FILE: MSMg01no078_k15.b1 PHD_FILE: MSMg01no078_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:03 2005CHROMAT_FILE: MSMg01no078_k15.g1 PHD_FILE: MSMg01no078_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCAAG
GTTCTCACCATGGAGTAGATGTGGTTGAAGATGTCTCGAGCGATCCGGGG
AATGATGCCCATCAGCTGAGGGTCGTGCAGCTTCCCCTGAGGAGTGAAGG
CATGCCGGAGTAAGGCTGAGGTGCACAGGGAGACAACACTGAGGGCCCTG
GGGATACGGGGGTGAGCAGTGACATGAGGGGCATCCTCAGTTGGTAGAAG
GTCACCACCGTGGCTGCCTGTGAATGGAAGCTGACAGCTGACCAGCGTCT
GGACTATCAATGCTGCTGGATTTCTAGATACAAGGAGGACAACTGGAGTC
ACGAAAGCCACCGCAAGTGCGAGGTCTGAGGGACGCCTCTAATTCTCCCT
ATTTTTCCCCCCCTCATTTTATCTATCATATCTTTCTGACTCTGACTCTG
ATCCTCCCCGCTCTCCTGGATTTCCCCCTGCTACACCGACCTCTCTGATC
TCTTTGATCTTTTCTTGCACCTTCTCGAGTTTTCGTTCCTTTATTCCCCA
CCTTCCCGCCCATTCTTTTTCCTTTTTTTTTCTCTTGATTTTATTTCCCT
ATTTGCCCCAATCCACCACCTTCCAGTATCTCTCCCTTCTCCCGCTCGAC
TCCTCCTTTCCTTTTCTCTTTCTCCCCTTACTCTCATCTCTCCTACTCTA
TATTTTCTACCTTGTCCTTCTTTTCTCA
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCATGGATTCTAAGACTTCATACAAA
AGAGTCATCAATGAAAAAAAGAAGAAAAGAAACAAAGCACCCGCCTTTAA
TCGCAGAAGCAAGAGCAGGTGTGTGAGTCAGAGGCCAGACTGATCTGTAT
ATTGAATCCAGGCTAGACAAGAGCTGCGTGGGGAAATTAGTTCAAAAAAG
GTGGGGAGGGACCTGGAGAGGTGGCTCAGTGGTTAAGTGCGCTGGATGCT
CTTTCTGAGGACCATGTTTGATTCCGAGTACCCTAATAGTGGCTCACAAC
CATCAGTAACTCTGGTCCCAGGGAATCCAACCCTGTTTTCTGGCCTTACT
CAAGCACTGTATGCCCCCCCCCCACAGACAGACACAGGGCAAGACTCTCA
TGTACTTAACGTGTAAATGGAATAGGAAATGACCGAATACTTCATACTAA
CTCTAACCTTTCGTATCTTCGGATTGTCTCCCGCCCCCGGTTCCATTCTT
CTACCATGGAATCTTCTTTCATTGTCTACCTTGCGCATTATTGTCCGCTT
ATTTTTGCATTTCCTTGTTCTCTTTTACTTACACCCTTTTTGTCCTCCCA
GTCTTTCTTTCCCCCCTTTTTTTCCCCTTTCCTACCTTCTTCGCTCCCTT
TTTTTTTCCCCTCCTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_k15.b1 MSMg01no078_k15.b1 CHROMAT_FILE:
MSMg01no078_k15.b1 PHD_FILE: MSMg01no078_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:03 2005
         (236 letters)



>mm_chr10_126684383_126685019
          Length = 637

 Score =  404 bits (209), Expect = e-117
 Identities = 224/233 (96%), Gaps = 8/233 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattcaaggttctca-ccatggagtagatgtggttgaagatgtctcgagcgatccggg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcaaggttctcatccatggagtagatgtggttgaagatgtctcgagcgatccggg 264

                                                                       
Query: 64  gaatgatgcccatcagctgagggtcgtgcagcttcccctgaggagtgaaggcatgccgga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatgatgcccatcagctgagggtcgtgcagcttcccctgaggagtgaaggcatgccgga 324

                                                                       
Query: 124 gtaaggctgaggtgcacagggagacaacactgagggccctggggatacgggggtgagcag 183
           ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 325 gtaaggctgaggtgcacagggagacaacactgaggg-------gatacgggggtgagcag 377

                                                                
Query: 184 tgacatgaggggcatcctcagttggtagaaggtcaccaccgtggctgcctgtg 236
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 378 tgacatgaggggcatcctcagttgggagaaggtcaccaccgtggctgcctgtg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 637
Length adjustment: 9
Effective length of query: 227
Effective length of database: 628
Effective search space:   142556
Effective search space used:   142556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)