BAC Information

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BAC

Clone NameMSMg01-079F09
Chromosome10 (Build37)
Map Location 90,735,875 - 90,736,528
singlet/doubletsinglet
Overlap genenone
Upstream geneAnks1b, Apaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
Downstream geneLOC100041799, LOC667203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F09.T7 (MSMg01no079_f09.b1)MSMg01-079F09.TJ (MSMg01no079_f09.g1)
ACCAG300439AG300440
length707708
length of high quality
(start - end)
669 (39 - 707)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no079_f09.b1 PHD_FILE: MSMg01no079_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005CHROMAT_FILE: MSMg01no079_f09.g1 PHD_FILE: MSMg01no079_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CTTTGTGCCTCTCTGTTTCCTCCTCCTCCTTCTTTTTGGTACAGTGCTGA
AAACTGAACTCAGTACCTCATGCCAGGCAAGGTCTCTTTCACTGAGTCGC
ATCCTCAGTCAAGGTCTGAGTCTCTATCATGGGAACAAGAACTATGTTCT
AGGAATGCCTCTTAACCCACAAGAGACATCCCCTCTCATATCTCAATGGC
CAGAGCTGGGTCTTATAACTACGCTTAAGAAATCCTGGTATCGGCCGGGC
GGTGGTGGCTCATACCTTTGATCCCAGCACTCGGGATGCAGAGGCAGGCG
GATTTCTGAGTTCGAGACCAGCCTGGTCTCAAAGTGAGTTCCAGGACAGC
CAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAACCAACCAACCAAC
CAACCAACCAAATAAACCCCCCCCCCCCAAAAAAAACCCACCACCACCAC
CACCACCACCAAACAAACCAACCAACCAAACAAACTAACAAAAAAAGAAA
TCCTGGTATCAGAACGACTGACATAATGAAAAGCTTCTCCAGCCCCTCAC
GGGGTACCTGTGAAGTTGGCTCAGGTTAGGTGGTGGGGCAGCTTCCTGAC
TGGCTGCTTGTGAGGGATAGATTTTCCTGGAATTGACTTGGTTTGGACTT
TTGAAGT
AATGTGCTAGGCCTGGCGGCCGCCTGGTTTCTGACTTGGGGTGACCTATA
GAAGGTTTCGTAAAAATCAGTAAGAATGTTACCTATTCAGTAACATTCAA
ATTCACTTCTAGTAGAGACAGTGAAAATAATCAGGCATTACAAAGTACAG
AGCTAGAAAAGCTGGGGACTAGTCTGCATAGTAATTACTTAGGACAATAG
CTGAGTCTTGTCCAAACACAGGAATGCACAATGGCCTAGCAAATGGGTGT
TTTGTCGCATGAAAGAGTTAGTGGAAGGGAATTTCCCTGATACAGGCTTC
TTCACTAGGCCCATATGATAATTTTAATCAGGTATTTACTAAAGATCCCC
TGGTGGTGGGTTTAACAATAGACGAGCACCTCGATCCATTTTCAGTGGTA
AAAGTGGCCTGGTCCCTGCCATCTTTTGATGTAAGCATTCCTTTTGTTTT
GTGCCACTGCAACTTGGTGGATGTGTTCGCCTGGTTTTTTGTTTTTCTTC
TGTATAAAAAAGTCTGGTGTTTGCTTGGCCAATACATTCAGATCCAACAC
ACTCTCTCATGTCGTGTCTGTTTGTCACCCCATTCTCTCCAACTCTATGC
CCATCTGCCTGATCCCCACGGATTGAGGTGGTTTGACTGCTCCCAGTCCG
CGTTTTGTGGTCCCTGAAATTTTTAATCTAGTCTAGATGGCCTCTTCTCT
GTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f09.b1 MSMg01no079_f09.b1 CHROMAT_FILE:
MSMg01no079_f09.b1 PHD_FILE: MSMg01no079_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:56 2005
         (669 letters)



>mm_chr10_90735658_90736728
          Length = 1071

 Score = 1133 bits (586), Expect = 0.0
 Identities = 632/654 (96%), Gaps = 13/654 (1%)
 Strand = Plus / Plus

                                                                       
Query: 29  ttcctcctcctccttctttttggtacagtgctgaaaactgaactcagtacctcatgccag 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ttcctcctcctccttctttttggtacagtgctgaaaactgaactcagtacctcatgccag 277

                                                                       
Query: 89  gcaaggtctctttcactgagtcgcatcctcagtcaaggtctgagtctctatcatgggaac 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcaaggtctctttcactgagtcgcatcctcagtcaaggtctgagtctctatcatgggaac 337

                                                                       
Query: 149 aagaactatgttctaggaatgcctcttaacccacaagagacatcccctctcatatctcaa 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagaactatgttctaggaatgcctcttaacccacaagagacatcccctctcatatctcaa 397

                                                                       
Query: 209 tggccagagctgggtcttataactacgcttaagaaatcctggtatcggccgggcggtggt 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tggccagagctgggtcttataactacgcttaagaaatcctggtatcggccgggcggtggt 457

                                                                       
Query: 269 ggctcatacctttgatcccagcactcgggatgcagaggcaggcggatttctgagttcgag 328
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 458 ggctcatacctttgatcccagcactcgggaggcagaggcaggcggatttctgagttcgag 517

                                                                       
Query: 329 accagcctggtctcaaagtgagttccaggacagccagggctacacagagaaaccctgtct 388
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gccagcctggtctcaaagtgagttccaggacagccagggctacacagagaaaccctgtct 577

                                                                       
Query: 389 tgaaaaaccaaccaaccaaccaaccaaccaaccaa--------ataaac---cccccccc 437
           |||||||||||||||||||||||||||||||||||        ||||||   ||||||||
Sbjct: 578 tgaaaaaccaaccaaccaaccaaccaaccaaccaaccaaccaaataaacacccccccccc 637

                                                                       
Query: 438 cccaaaaaaaacccaccaccaccaccaccaccaccaaacaaaccaaccaaccaaacaaac 497
           |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 638 cccaaaaaaaacccaccaccaccaccaccaccaccaaacaaaccaaacaaacaaacaaac 697

                                                                       
Query: 498 taacaaaaaaa--gaaatcctggtatcagaacgactgacataatgaaaagcttctccagc 555
            ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaacaaaaaaaaagaaatcctggtatcagaacgactgacataatgaaaagcttctccagc 757

                                                                       
Query: 556 ccctcacggggtacctgtgaagttggctcaggttaggtggtggggcagcttcctgactgg 615
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 758 ccctcacggggtacctgtgaagttggctcaggttaggtggtggggcagtttcctgactgg 817

                                                                 
Query: 616 ctgcttgtgagggatagattttcctggaattgacttggtttggacttttgaagt 669
           ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct: 818 ctgcttgtgagggatggtttttcctggaattgacttgttttggacttttgaagt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1071
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1061
Effective search space:   699199
Effective search space used:   699199
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)