BAC Information

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BAC

Clone NameMSMg01-079I22
Chromosome10 (Build37)
Map Location 17,021,285 - 17,021,488
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I22.T7 (MSMg01no079_i22.b1)MSMg01-079I22.TJ (MSMg01no079_i22.g1)
ACCAG300609AG300610
length699697
length of high quality
(start - end)
204 (149 - 352)167 (145 - 311)
definitionCHROMAT_FILE: MSMg01no079_i22.b1 PHD_FILE: MSMg01no079_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:13 2005CHROMAT_FILE: MSMg01no079_i22.g1 PHD_FILE: MSMg01no079_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTTTGAACTTTGGTTATGAAAGTGTAACTACTGATGACCCTCTCAGCTC
TTGTCTTTATCTACCCTGGAGAATATCCTTCTAATTATGGTAAAGGTTAC
ATTGCTATAACAAAATAATTTAAAATTCTATGGCTCAAAGAAGGAAGGGA
GGTCCATGCAGGCAGAAAAATGGGAGAAAAGACTCAAACCCAATTTTTAA
ACATTTTGAGGTAGACATAATAGACAGTACTTGCCCTCATGATCTGTTCA
TGAGGACTGTTCTTCTGATGGTCACATTTGAAGCACAGGAGACTGAGGGA
CCAGAAGAAACAGTGCAGCCCTGAGCTCATCTTACAGAAGGGGTGAATAT
ATTGTTGTGAATGATTCACATTTCCTGTGTAATCTCTCAATCAATACAGT
ATAAGAAGGGGCGTTTTTGTGTTTGCTTGTAACATATTCATGCACGTGGT
GAGGTCATTAGAGGATTAAGGCAAGATAAAACTCCATCTCTCATCCCTAT
CCCCATAGTCCCCTGAAAGCTCAGATAAAGGAAATTAATACTATCCATGC
TCCAGTTCTAACATAGAATCTGGCTTGCGAAATTATACTCATTCCAGCAT
TATTTCGTACGACGACTATTAGAAGGCCCTATTCACGACATTTATAACT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTCAGACTTTCTAAGACCTAATACCAATACT
CTTCAAACTATTCCACAAAATAGAAACAGAAGGAGCACTACCCAATTCAT
TTTAAGAAGTCACAAATACGCTCATACCTAAACCACAAAAAGGCCAAAGA
AAGAGAACATCAGACCAATTTCATTTAAGAATATTGATGCCGAAATACTC
AATAAAATTCTCACAAACTGGATCCAAGAACACATCAAAATGACCATCCA
TCATGAACAAGTATGCTTCATCCCGGGGATGCAGAGATGGTTCAATATAT
TGAAACCCACCAACGTAATCCACTATATAAACAAACTCAAAGAACAAACA
CATGATCATTTCATTAGATGCTGAAGAAAGCATTTGACAAAAATCAACAC
CCCTTCCTGATAAGAAGTCTTGGAAAGATCAGGAATTCACGGGCCATACT
TAAACATAGTAAAAGCAATATAGAGCAAACCGTTATCCAACATCAGACTA
AATGGAGAGAAACTTGAAGCAATCCATCTAAAATCACAGACTAGACAAGG
CTGCCCACACTCTCCCTATCTATTCATATAGTACTTGAAGTCCTAGCCAG
AACAATTAGCCAACAAAGGGAAGTTAACGGGATACAAATTACAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i22.b1 MSMg01no079_i22.b1 CHROMAT_FILE:
MSMg01no079_i22.b1 PHD_FILE: MSMg01no079_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:13 2005
         (204 letters)



>mm_chr10_17021085_17021688
          Length = 604

 Score =  364 bits (188), Expect = e-105
 Identities = 200/204 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattgctataacaaaataatttaaaattctatggctcaaagaaggaagggaggtccatg 60
           |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 404 acattgctataagaaaataatttaaaattctacggctcaaagaaggaagggaggtccatg 345

                                                                       
Query: 61  caggcagaaaaatgggagaaaagactcaaacccaatttttaaacattttgaggtagacat 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 344 caggcagaaaaatgggagaaaaggctcaaacccaatttttaaacattttgaggtagacat 285

                                                                       
Query: 121 aatagacagtacttgccctcatgatctgttcatgaggactgttcttctgatggtcacatt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 catagacagtacttgccctcatgatctgttcatgaggactgttcttctgatggtcacatt 225

                                   
Query: 181 tgaagcacaggagactgagggacc 204
           ||||||||||||||||||||||||
Sbjct: 224 tgaagcacaggagactgagggacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)