BAC Information

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BAC

Clone NameMSMg01-079L23
Chromosome10 (Build37)
Map Location 51,678,210 - 51,678,788
singlet/doubletsinglet
Overlap genenone
Upstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
Downstream geneVgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079L23.T7 (MSMg01no079_l23.b1)MSMg01-079L23.TJ (MSMg01no079_l23.g1)
ACCAG300754AG300755
length730731
length of high quality
(start - end)
644 (44 - 687)580 (65 - 644)
definitionCHROMAT_FILE: MSMg01no079_l23.b1 PHD_FILE: MSMg01no079_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:27 2005CHROMAT_FILE: MSMg01no079_l23.g1 PHD_FILE: MSMg01no079_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAATCCTAAT
TTGCTCCCATAACTTTAGGAAGAAATTTTTAGAGATGGTCTTAGTTGCTA
GAAAGTTGTAACAAAGTTAGAATCAAGAATAGAATGTGTCCACTCCTCAG
AAAAGTAAGTAAAAGCCACATAATAAGAAATACAATGAGCTATCATAACC
ACACTAAAAGAGAAATAGACTTGGGAAAATTTTGTGTTCAAGGAAAAATA
AGTCCCAGGATAAAGTCGCAGGTGTGTGCTATATCAGGCAAGGCCATATA
AAAACTGTTGCTTTGAACTTTTAATGAGTATATTATAATGAAACACCACT
TTGAACTTAATATCAACATCCTTCTCTAACTCCAGTTTTATGCAACACTT
TTATCTGAGATAATTTTCTAAAGAACTTTTGTCTAAGAAGGTATAAAAAG
ACCAGAAAAGGGAAATAAAGTGGTTTGTGGAATGGTTTGGCTTGAGGGGC
TTTGCCCCCTGCATCCATCTATTAACTCATCCATCCATCCATCCATCCAT
CCATCTACCCATCTATCCCAATGTGTATGTTTGTTTGTCTATATGTTTCT
GTATCAAGTACTTGTGTATATGTATAAGCATGTATGAATACTTGTGGGGT
TGATTGTGACAGACGGTTGTGTCCGACCAGAGTGTGGGTGTATGAAGGAT
TGAATGTACATGTGTCTGTGCAAATTGACC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTATACACCCGAGATCATTTGCAACTATTTATGCTTG
GCTAGAAATTTAGGCTAAACTCCAAACAGGGTAAGAAACATAATGATCAA
TATTTCTGATGCAATTGATGAGAAAAATGATTTTTAGGAAAATGTTTGAG
TAAACTTTTTAAATGTATTAGTAAAATTTAGAGGGCATAGAGGAGAAGAC
TGACAGAAATATGAAATTTGAAAGTTACAAAACAAAAGACGGACTAGGAG
AAACACAATAATACAATACACCAATGGTGTCTGACAAGATTGAGCGATAA
TAAATATACCAGAGAAGAAAACACTGGAACAGATGAAGATATGATGGGCA
ATTCTCAGAAACGACAAAAAGCTAAGTATATGAAAGCCTGTTGAACATCA
TCAATAATTGGGGGATTTCAACAGGAAAGGGTATTTCCTACCAACTCTGT
CAATCATTAAATGTATAAGCTTTGCGCTGGAGAGATGGCTCAGCATTTAA
ACCAGGTACCACACTGTACCTGTAGAAACCTGAGTTTGGTTCTTAGCCAC
CATGCAACTTCACCTCCAGGAGATCTGGCATTCTTTTCTGAACTTTGTGG
ACATCTGCACTTATGTGCACATTGCTACCAATAGACACCCTTATATACAC
AATTAAACATCATAAAGAACAATCACAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_l23.g1 MSMg01no079_l23.g1 CHROMAT_FILE:
MSMg01no079_l23.g1 PHD_FILE: MSMg01no079_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
         (580 letters)



>mm_chr10_51678129_51679107
          Length = 979

 Score = 1069 bits (553), Expect = 0.0
 Identities = 574/581 (98%), Gaps = 3/581 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tatacacccgagatcatttgcaactatttatgcttggctagaaatttaggctaaactcca 601

                                                                       
Query: 61  aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aacagggtaagaaacataatgatcaatatttctgatgcaattgatgagaaaaatgatttt 541

                                                                       
Query: 121 taggaaaatgtttgagtaaactttttaaatgtattagtaaaatttagagggcatagagga 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 540 taggaaaatgtttgagtaaagtttttaaatgtattagtaaaatttagagggcatagagga 481

                                                                       
Query: 181 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gaagactgacagaaatatgaaatttgaaagttacaaaacaaaagacggactaggagaaac 421

                                                                       
Query: 241 acaataatacaatacaccaatggtgtctgacaagattgagcgataataaatataccagag 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acattaatacaatacaccaatggtgtctgacaagattgagcgataataaatataccagag 361

                                                                       
Query: 301 aagaaaacactggaacagatgaagatatgatgggcaattctcagaaacgacaaaaagcta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 360 aagaaaacactggaacagatgaagatatgatgggcaattctcaaaaacgacaaaaagcta 301

                                                                       
Query: 361 agtatatgaaagcctgttgaacatcatcaataattgggggatttcaacaggaaagggtat 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 300 agtatatgaaagcctgttgaacatcatcaataatt-ggggatttcaacaggaaagggtat 242

                                                                       
Query: 421 ttcctaccaactctgtcaatcattaaatgtataagctttgcgctggagagatggctcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttcctaccaactctgtcaatcattaaatgtataagctttgcgctggagagatggctcagc 182

                                                                       
Query: 481 atttaaaccaggtaccacactgtacctgtagaaacctgagtttggttcttagcca-ccat 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 181 atttaaaccaggtaccacactgtacctgtagaaacctgagtttggttcttag-cacccat 123

                                                    
Query: 540 gcaacttcacctccaggagatctggcattcttttctgaact 580
           ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 122 gcaacttcacctccaggagatctggcattctcttctgaact 82


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space:   552330
Effective search space used:   552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)