BAC Information

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BAC

Clone NameMSMg01-080C16
Chromosome10 (Build37)
Map Location 11,817,249 - 11,817,494
singlet/doubletsinglet
Overlap genenone
Upstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080C16.T7 (MSMg01no080_c16.b1)MSMg01-080C16.TJ (MSMg01no080_c16.g1)
ACCAG301074AG301075
length767718
length of high quality
(start - end)
39 (65 - 103)247 (68 - 314)
definitionCHROMAT_FILE: MSMg01no080_c16.b1 PHD_FILE: MSMg01no080_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:59 2005CHROMAT_FILE: MSMg01no080_c16.g1 PHD_FILE: MSMg01no080_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAGATCCGCGGAATTCAG
AACATATCCATAGTGAACCACGTGATTCTGACGGTACCTGTCCTTGTATG
GGGTGGTTTCACTGCACCTTGCTTTCTGAACACATAAACCTTTTCACTCT
GCAGTCTGTCATACTGCACAGCACCAACAACCGCCCCTGTAAACAGCTTA
ACTTACATTCAAGGCTTGTTGTCTGCTATGAATTCACTGAACATCCTCTG
TCTTCCGTCCTTGTTGAATCATGCACATTTCTTTATCATCACACAGATTT
TTACTATTTTCACGTTATTTTTTTCACATAACGTATCCCCAGATTCGCCC
CTGTGGATTATTTCTCACCCTATCTCGACGCCTATTATTATTAATTTTCA
ACCTCTATTATTACCCCCCCCCCGCGTTTTCCCCATTCTTTTCCTTCATT
TTTTTTTCCACCACACACCTTCTCCCCTTTCCTCCTCCTTTTCTTCTTCA
CACCCCCCTCTCCTTTCACTCTCATATCTTCACAGATTATATTCTTCATA
AATCATTCCCCCTACCTTATCCCCCCACCCTGTTTTTATTTTTCCCATTT
TTTTTTTATTTTATTTACCTTTTATTTTACATATCTTACCCCCTTATTTT
TTCCCTTTTTTTTTTTATTTCCCTTTCACCCTTTTCTTCACCCCCTCTTC
TTTTTTTCCCTCCCTTTCCCTTTCCCCCTCTTTTCCTTTTTTTTTTTTTT
TTCCTTCTCCCTCTTTA
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGCTATAATGCTCTGCATTAAGTACTTTATA
GATTTGACCAGCCTTGAAGCTTTTCTTTAATCTCCACAGATCTCCTGAGG
ACAGAAGGTACTAGCCGGGGTGAGATATGTTTACTGCTACAGGAGTGTAT
GTGGTTCAGATCAGTTTCCCATTTAAATGTTTGTAAACTTTGGACAAAAT
GAGTTACCAGTGGTTCTGTTAAAAAAAAATGCTGAGACAGCTAGACCCTG
TCTGAGAGATCTTATATTCATAGAGCCACTCCAAGTTGTCTGGCTTGCTG
TCGGAATCACTGTAGGTTTCTAGCTATTTACTGATCTGGATGCAGTGTAG
TATTCTGACCCCCCCCGAGAAGTTACTAGTGCAATATCTGCCATTCATGA
GTTCTTGAGCATCAACACTGTTTGCACCTGATATTTTCCAGTCCCTACTA
TCTTTTATTCTACCTATTTATCTGCCTTTCCCTGATCTTATTTTCTTAAA
TGTTATGTTTCACTGTCCCCTTTTTTTTGTTTTTTCCGTTTTTATACCGT
TTTATTTTTCCCTTTTATTTACTCCCTTTTTTGTTTTCCCCCCCTCGCTA
TATATATTTTTCTTTTTTCCTCCCCCCCCTTTTTTTCCTTCCCCCGCCTT
TTTTCCCCCTTTTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_c16.g1 MSMg01no080_c16.g1 CHROMAT_FILE:
MSMg01no080_c16.g1 PHD_FILE: MSMg01no080_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:59 2005
         (247 letters)



>mm_chr10_11817049_11817694
          Length = 646

 Score =  439 bits (227), Expect = e-128
 Identities = 242/247 (97%), Gaps = 1/247 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggctataatgctctgcattaagtactttatagatttgaccagccttgaagcttttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 caggctataatgctctgcattaagtactttatagatttgaccagccttgaaacttttctt 260

                                                                       
Query: 61  taatctccacagatctcctgaggacagaaggtactagccggggtgagatatgtttactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatctccacagatctcctgaggacagaaggtactagccggggtgagatatgtttactgc 320

                                                                       
Query: 121 tacaggagtgtatgtggttcagatcagtttcccatttaaatgtttgtaaactttggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tacaggagtgtatgtggttcagatcagtttcccatttaaatgtttgtaaactttgaacaa 380

                                                                       
Query: 181 aatgagttaccagtggttctgttaaaaaaaaatgctgagacagctagaccctgtctgaga 240
           ||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 381 aatgatttaccagtggttctgttaaaaaaaa-tactgagacagctagaccctgtctgaga 439

                  
Query: 241 gatctta 247
           |||||||
Sbjct: 440 gatctta 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space:   151606
Effective search space used:   151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)