Query= MSMg01no080_d12.b1 MSMg01no080_d12.b1 CHROMAT_FILE:
MSMg01no080_d12.b1 PHD_FILE: MSMg01no080_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:03 2005
(309 letters)
>mm_chr10_54009122_54009830
Length = 709
Score = 555 bits (287), Expect = e-162
Identities = 300/305 (98%), Gaps = 2/305 (0%)
Strand = Plus / Minus
Query: 6 aatccaaacagaccatttatctcctaaaaagatgttttcatttgtaaggacaaattagag 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 aatccaaacagaccatttatctcctaaaaagatgttttcatttgtaaggacaaattagag 410
Query: 66 tttccttcagtacaatttcaaaactggtcttgagtatccactaaggatcatactatgtct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 409 tttccttcagtacaatttcaaaactggtcttgagtatccactaaggatcatacaatgtct 350
Query: 126 tggatccattaggaaatttaagacaagacacatcctctatcctcaagaggctcccacatc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tggatccattaggaaatttaagacaagacacatcctctatcctcaagaggctcccacatc 290
Query: 186 aattcaagaagctttaaaacaacaatcagtaggacaaatagaacagaagtacaaaaaaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aattcaagaagctttaaaacaacaatcagtaggacaaatagaacagaagtacaaaaaaat 230
Query: 246 gtaccagcagagatgccaaaactttgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtatg 303
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 229 gtatcagcagagatgccaaaactttgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtatg 170
Query: 304 tgtgc 308
||||
Sbjct: 169 agtgc 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_d12.g1 MSMg01no080_d12.g1 CHROMAT_FILE:
MSMg01no080_d12.g1 PHD_FILE: MSMg01no080_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:03 2005
(576 letters)
>mm_chr10_53992609_53993584
Length = 976
Score = 1060 bits (548), Expect = 0.0
Identities = 569/576 (98%)
Strand = Plus / Plus
Query: 1 tatatccagatctgcaggcagcaggaaggaaggaagattatatactgctaggcctggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tatatccagatctgcaggcagcaggaaggaaggaagattatatactgctagacctggttt 260
Query: 61 tgaacttctgaaacctcaaagcctaccccctggtggtacacttcctccaacaaagcccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacttctgaaacctcaaagcctaccccctggtggtacacttcctccaacaaagcccca 320
Query: 121 cctaccacaacaagaccagacttccaaatagtgccacttcctgtgagcctatgggggcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctaccacaacaagaccagacttccaaatagtgccacttcctgtgagcctatgggggcca 380
Query: 181 gtctttcaaactctcatataccctggtgatcattttcttttccaaggttctgacttggta 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 gtctttcaaactctcatataccctggtgattattttcttttccaaggttctgacttggta 440
Query: 241 tatcaaactccatgtattctttgttccactgggggctcccaaggatacaggtcctttttg 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tatcaaactccatgtattctttgttccactgggggcccccaaggatacaggtcctttttg 500
Query: 301 ttttagctctacttctctctcccaattaaatgtcttcctttctaagagttgccatgattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttagctctacttctctctcccaattaaatgtcttcctttctaagagttgccatgattt 560
Query: 361 tattaataactatgtaaagtttctattctctttttgaaggcaagatcttgcttcaagtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 tattaataactatgtaaagtttctattctctttttgaaggcaagatcttgcttgaagtat 620
Query: 421 cctgaaactcaagtatccttagatttcaagtgtattctgactctgtctccaactgaactg 480
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 cctgaaactcaagtatcgttagatttcaagtgtattctgactctgtgtccaactgaactg 680
Query: 481 ggacatttccactaacagaactcttttaattttaagtttatacgcatatacattcatgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 ggacatttccactaacagaactcttttaattttaagtttatacgcatatacatgcatgca 740
Query: 541 tgggtatggtcacctacatatatgtgtggaggccaa 576
||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgggtatggtcacctacatatatgtgtggaggccaa 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
