BAC Information

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BAC

Clone NameMSMg01-080F05
Chromosome10 (Build37)
Map Location 84,567,267 - 84,567,740
singlet/doubletsinglet
Overlap geneAI597468
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4
Downstream geneMterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080F05.T7 (MSMg01no080_f05.b1)MSMg01-080F05.TJ (MSMg01no080_f05.g1)
ACCAG301196AG301197
length698693
length of high quality
(start - end)		633 (48 - 680)531 (73 - 603)
definitionCHROMAT_FILE: MSMg01no080_f05.b1 PHD_FILE: MSMg01no080_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:11 2005CHROMAT_FILE: MSMg01no080_f05.g1 PHD_FILE: MSMg01no080_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCTGCATGGGCTACGTGGAAAATAGCATGTCTTCATTCCTTTGCCA
ACTAACTTTGAGGAGTTTCAAAACTACACATATACTAGCAAGCAATGCAC
AGCAAGACATCACCTTGCTGGGTTTTATGCTTCTGTAGCTAACAATGCTG
ATCACTGCTTGTATAAAAGTTAGCTCCCGCCAACTAAATTAACAGCAAAT
AGACTACAAGAAAAGCACTGAGTTTGGCAACAAAGAAAAATTTATCAATG
AAAGTTTAAAAATCCCACACGGCCGGGCAGTGGTGGTGCTCGCCTTTAAT
CCCACCACTTGGGAGGCAGAGGCAGGCGGATTTCAGAGTTCGAGGCTAGC
CAGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAAAAAAAC
AAAACAAACAAACAAACAAAAAATCCCACACAAAGTGACAAATAATCGAG
ACTGTCAAAATAGTTTTAAGTATTTTTCTTAAAGAAACATGAAATAGGAT
TAAAATATTCTGCCAAGCCAGAAAACCAGTACTTCTGTCATCCTCACTAA
AATACACTTAATTTGTTCAATAGATGCTGCCATTCCTACTTTGTGCCACA
TCTTGTTGAGACAATGAGTGAACATAAAGACCGTACTCTTAATTGTAT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCGCTCTCACAGTCTTTCTACCCCGCCT
TCCCAGTGCCTTGAGTCTTAGGTGTAAGTGTTCCTTGTAGATGTACGGGA
TGGGATGTGGACTCCACTGCCATTTATTCCCTGTGTGTTGACCAGTCACG
GGCCTCTGTAGTAGCCTCCATCTGCTTCTTTGACGAGGGATGAGGCTCTA
TTTATCTGTGGGCATCAGGGTAAGTATTTAGAATGCAGTTAGAGATTAGG
TTCCATTGGGGAAATGACAGTGGGTATCTTCTGTGGGGTCCATGACCTCT
CCAGCCAGCGATAGTTGCCTAGCTTGTAGTACCAGGCTTAGACAGCTCTC
GGTTAGCCTCAGGATAGCAGGGTTACTGTTGCACCACTGGGACTCTCTTG
ACAGGCAGTCATAGGCTCCATGCTGGCTTGGACTGCTGCTTGCTTTTGTC
CCTTGGCAGCTTTTATACACCTTCAGATCCTGGGAAAGTCCTAAGAGAGG
AGCTTCCCAGGGCACTTCCCGCTTGATGCCTCCAAGTCCTGTGTCTGAAG
TGTGTGGTGTCCTCAGCAGCGGGGTCTTCCTTCACGTTCTGGGTAGCAAC
CTAGGGCAAAGTCAGTGGTCTATATTGGACCCTTCCTGATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_f05.b1 MSMg01no080_f05.b1 CHROMAT_FILE:
MSMg01no080_f05.b1 PHD_FILE: MSMg01no080_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:11 2005
         (633 letters)



>mm_chr10_84567267_84568299
          Length = 1033

 Score =  901 bits (466), Expect = 0.0
 Identities = 472/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattcttctgcatgggctacgtggaaaatagcatgtcttcattcctttgccaactaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattcttctgcatgggctacgtggaaaatagcatgtcttcattcctttgccaactaact 415

                                                                       
Query: 61  ttgaggagtttcaaaactacacatatactagcaagcaatgcacagcaagacatcaccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ttgaggagtttcaaaactacacatatactagcaagcaatgcacagcaagacatcaccttg 355

                                                                       
Query: 121 ctgggttttatgcttctgtagctaacaatgctgatcactgcttgtataaaagttagctcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 354 ctgggttttatgcttctgtagctaacaatgctgatcactgcttgtataaaaggtagctcc 295

                                                                       
Query: 181 cgccaactaaattaacagcaaatagactacaagaaaagcactgagtttggcaacaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgccaactaaattaacagcaaatagactacaagaaaagcactgagtttggcaacaaagaa 235

                                                                       
Query: 241 aaatttatcaatgaaagtttaaaaatcccacacggccgggcagtggtggtgctcgccttt 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aaatttatcaatgaaagttttaaaatcccacacggccgggcagtggtggtgctcgccttt 175

                                                                       
Query: 301 aatcccaccacttgggaggcagaggcaggcggatttcagagttcgaggctagccaggtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 aatcccaccacttgggaggcagaggcaggcggatttcagagttcgaggctagccaggtct 115

                                                                       
Query: 361 acaaagtgagttccaggacagccagggctacacagaaaaaaacaaaacaaacaaacaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 acaaagtgagttccaggacagccagggctacacagaaaaaaacaaaacaaacaaacaaac 55

                                                                 
Query: 421 aaaaaatcccacacaaagtgacaaataatcgagactgtcaaaatagttttaagt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54  aaaaaatcccacacaaagtgacaaataatcgagactgtcaaaatagttttaagt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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