BAC Information

Click to search

BAC

Clone NameMSMg01-080J03
Chromosome10 (Build37)
Map Location 58,317,006 - 58,317,111
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Downstream geneSh3md4, Sept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J03.T7 (MSMg01no080_j03.b1)MSMg01-080J03.TJ (MSMg01no080_j03.g1)
ACCAG301375AG301376
length686679
length of high quality
(start - end)
272 (49 - 320)106 (75 - 180)
definitionCHROMAT_FILE: MSMg01no080_j03.b1 PHD_FILE: MSMg01no080_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005CHROMAT_FILE: MSMg01no080_j03.g1 PHD_FILE: MSMg01no080_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTATAGGATCTGAAATTATTCTTTAAAAGATAAAAATTACTTA
GACAACAAAGCCTGCAGGAATTAGTATCCTGTAGACACGTCTGAGAAGAG
ATTATATAATCAAGGTCAGACACTTGACTCTGGATAAAGGCAGAGAGTCA
GAAAGGACAGTGACATAAAGACTCCATGTTCCTTGTTCTTAATTAATTTG
ACCATTAATTTGTTCAAAGTAAGATGTGGTCTGAATGTCAACACCTCCCA
TATTGTGTGTTTGCCCACTTGTTCCACGCCTGGTGGCACTGTTTTGTAGC
CTGACAGAGTTTCTGACAGAAGTACATCCCTTGGGTCTTCACTCTGCTTC
TTCACTGCTGGTGATACATGATCAGTCACCTTATGCTCCTGTTACTCTCT
CTGCTACAATGGATTCCATTCCGATGTACTTTTCCTTCCTCTGCTGTCTG
TCATACATCTGGTTACAGCAATTTTAGCCCCAGTTAACGACCACCATCTT
TACCGTCTTTCATTATTCCCGTATGCACGCGTGTTTTCTGCATGTTCTGC
CTGCCCATCCGTCACTGAATGCTTGTCCTTCTCCGCATCGGCGCACGACT
GTTCACAAAGACTTTTTCCTTTACCCCGCTCCTGTT
NNCCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATAATTGCCCAATTTATTAACCCC
TGTATCTGACTGAATTTGTGTAGTCTGAATAGATGGTTGTGGACTCTTAG
GGGACCCTCTTGGAGGAGGCTGCTTCTTAATGAGATACAGAGTTGGGGTT
TGCTCTCTATTGCGTCTCACCGCTGTGGATGAAGGTTGTACCTAATCTAA
CTCTTTAGGGCCAACCTGTGTATGTAGGCAGGTAGGGAGGCATCTCCTTG
AGGCCTGGGGTCTCAGGTTGCTTATGAGCTCGGATAACAGTTATTTAGGA
CAGCCAATCTGTCCTATATAAGCACCTCTTAGCTCCAGCTCCAGCCCCGC
CCCTGTCTCTCCAGTACCCTGACCTGTCCTCCCTGAGCCTAGTATGCATC
TGCACTCATCCTTTCCGGCATACCCAGTCGTAGGGAACCTTTTTGCTCTG
GAGCCCATTATTCATTTGAGCATCTCCTTGGTTCTAATATACCATTGTCT
TGTTTTGTTCCCTGGACCTGTACTGATTGCACCCATGTCTCCTTGATTAA
CCCTGTTTTTGTTCGCTCTTGTATTCTCTGTTCTTATGAACCATCTATTC
CAGTGAAGTGACTCCACCCTCCATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j03.g1 MSMg01no080_j03.g1 CHROMAT_FILE:
MSMg01no080_j03.g1 PHD_FILE: MSMg01no080_j03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (106 letters)



>mm_chr10_58316806_58317311
          Length = 506

 Score =  182 bits (94), Expect = 6e-51
 Identities = 103/106 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttataattgcccaatttattaacccctgtatctgactgaatttgtgtagtctgaatagat 60
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttataattgcccaatttaacaacccctgtatctgactgaatttgtgtagtctgaatagat 260

                                                         
Query: 61  ggttgtggactcttaggggaccctcttggaggaggctgcttcttaa 106
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgtggactcttaggggaccctcttggaggaggctgcttcttaa 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)