BAC Information

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BAC

Clone NameMSMg01-081B15
Chromosome10 (Build37)
Map Location 68,378,120 - 68,378,282
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081B15.T7 (MSMg01no081_b15.b1)MSMg01-081B15.TJ (MSMg01no081_b15.g1)
ACCAG301782AG301783
length707742
length of high quality
(start - end)
61 (86 - 146)163 (68 - 230)
definitionCHROMAT_FILE: MSMg01no081_b15.b1 PHD_FILE: MSMg01no081_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:12 2005CHROMAT_FILE: MSMg01no081_b15.g1 PHD_FILE: MSMg01no081_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGACTTTCTCCTATAAAAATATCGTCTGACTAAAGGCAGTTTTATTT
CTTTTATTCTGATGAGTACAACTTTCCTTTTCTATAAAATATATATTCGC
CTAGATATATCGATACTTAATATCAATCAGCAACAGGATATTCTTCCCAA
AATAGTAGTAGATAAGGGTAGGCCTCTCTTATTCTTCCCCTTAGTCCTTA
ATATTTAATACGTTTGCATAATTGATTCCTTTTTTGAATAAAAAGAATTT
AAAGAAATGTAAACTCAAAGAACTTATATAACCTTCCCCTACCAATTCTA
TAAGGGAGGTTTTTTTTTATTTTATGAAATTTTACTTAAGATATAATTTC
ACTTAACTCTAGATATTATATAATCCATATTCACTTTTTTTTTTTCTTTA
TTCATCTTTCACCTACTTTTTTCATTCTATTATTCTACTTTACTTTCTTT
GATATATTACTTATCACTCTATTCTCTACTTTTATACTTCTACCACCCCC
TTATTTTATTCTATCCCTCGTATCATTCTGTTATATATCTTTATTATTAC
TTTTCTTGCATATTTTTATTATTTTTCTTTTTTTTTTTTCTTTCTAATAT
CTCCTGTTTTCATTCTTACTATAGATTTTTTTTATTTTGCCGTACTCCGC
CTACTTT
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGGGAAGAAAATTACTAGCAAGCTAAAGCAGA
TTTGTGACAATTTACCCCATACCACTGTGCCTGACGGGGATAATGCTGAA
GGAGCCCCTGGCTCACATTTCCAATGGGTTTTCATTAATTCACATTTCAT
ATTCATATGCATGACAATGACTAAATTTCAGAGCTTAATTTCCCAGTCCC
TGAGGGGACACAGCATAATGATCATGAATATTTTGAAATACTGTGACTTA
GACACTGCACGCTTAATCAACTTGTCAGATTATTGCATTCCGAAATGTTC
ATAGACAGCTGTTCATGGTCCGATCACAAATTACTTGCTATGCAACCATG
ACGCGCAGTGCGTGCTTTCCCAGCCGCCGGCGCCCCTACGCCGTGTAGCG
TGCCGCCTTGTGTCCCGACGAAGGACACTGCATATGGACCTCAGCCGGTC
CGCTTGGCGATCATGCCGGACCGTCCCGCGCGCCCGCGGTGAATCCCCGC
CCACCCGGCACCGCTCTAGCCCTCCTGTCATGCGAACGCGTGGCCCGGAC
CGCCCGGCGCCCTCGAGCCCCCCTCTACCTCGCCGCTCCCGCGCGCGGCC
CTCGCCCCGCTCGACCGCGCTCCCGTGCCCCCCACGCCTCGCCATCTCGC
ACGGACCCTCGCCGCTCGTCACCCCGCGTCGCGGCGCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_b15.g1 MSMg01no081_b15.g1 CHROMAT_FILE:
MSMg01no081_b15.g1 PHD_FILE: MSMg01no081_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:12 2005
         (163 letters)



>mm_chr10_68377920_68378482
          Length = 563

 Score =  315 bits (163), Expect = 7e-91
 Identities = 163/163 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggaagaaaattactagcaagctaaagcagatttgtgacaatttaccccataccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ctgggaagaaaattactagcaagctaaagcagatttgtgacaatttaccccataccactg 304

                                                                       
Query: 61  tgcctgacggggataatgctgaaggagcccctggctcacatttccaatgggttttcatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgcctgacggggataatgctgaaggagcccctggctcacatttccaatgggttttcatta 244

                                                      
Query: 121 attcacatttcatattcatatgcatgacaatgactaaatttca 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attcacatttcatattcatatgcatgacaatgactaaatttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)