BAC Information

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BAC

Clone NameMSMg01-082E19
Chromosome10 (Build37)
Map Location 95,779,130 - 95,779,659
singlet/doubletsinglet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
Downstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082E19.T7 (MSMg01no082_e19.b1)MSMg01-082E19.TJ (MSMg01no082_e19.g1)
ACCAG302701AG302702
length725677
length of high quality
(start - end)
304 (45 - 348)528 (72 - 599)
definitionCHROMAT_FILE: MSMg01no082_e19.b1 PHD_FILE: MSMg01no082_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:44 2005CHROMAT_FILE: MSMg01no082_e19.g1 PHD_FILE: MSMg01no082_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTTGTCTGGAAATCTAGGATAAAATTTCCTTTTTAAAGAATCTT
AGCCGGCCAGGTATCAAGTGCACACCTGCCACCTAGCCCTAGGGAGGCTG
AGGCAGAAGTACTGGCATGTGTCTGAAGCATGAATGGGCAGCATAATAAG
TTCCAGGACCCTCTGGGCTACTGGATGAGAGCAGAACAGATGAATGTAGA
GGAGAACCTGGAGAATGGAGAGAAGCAGGACCAGGAAGAGGAGGAGGGAG
AGGAGGACCAGGAGAAGGTAGAGGAGGATGAGGAGGAATAGGAGGTGTAT
TTCTCTTTTTTCTTTTTTTCCTTGTCCCTCTCCCTCTTTCCTTCTCTCCT
CCTCCTCCTCCCTCCCCCCCCCTCTTTTCCCTTCTTTCCCCCTCCTCCCC
TCTCCTTCCCTCTCCTTCTTTTTTCCTTTTTTCCTTTTGCTCTTCTCTAC
TCCCTCCCTCTATCCTTCCGCCGCTTCTCTATCCTCTCCCCCTCCCCTAT
TATCCGCTCCTCTCTTAATCTTACCTCCCCCTTCTTTCTTTACTCCCTTT
TTTTTCTTCCCCCTACTTTCACCTCCCCTCTTTTTCTCATCTTCTTGTTC
TCACCCCTCTCTCCCCTGTGTATCCCCCTCCCCACCTCCCTCTCTTCTTT
TCTCCCTCCGCTGTCTTTCCCCCCG
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCAACAGAAATGATGAAATATTAATGATC
ATGATTCATATAAAATTCAGTTTCTCTTAATAAGTCAGGCAGAAAGCAGA
GGTCTAGGTTTAATAACCCTTTAGAGCCAAGGAGATAACTGGAGGCTTTT
GTGAGTTAGTCTACTTTAAAGGGCTCCATTTTGAAGTACTGTATGATTGA
CACATACCTCTTTAATATCAATAACCATCAAACAGTACCAATAGAGAAAT
GTGCAGGTGTCAAGTTCAATAGTTTCCACATGCAGTTTCATTAGTAAGTG
GAAAGTCCCAAATTGGTTAAGTGATTAAATTTCTGTCACTGCCAAATCAT
TGTGGGGAACAGGCCATATAACCATTATTAGCATGGTTTTCTGGGATCAG
CTTTTTGGTGTCTTGGAAAAGCAGGATTACAAACCAGTAGACTTTGAGTT
GAATATTAAAGGCCAAGTATGACCTTGCACATATCTCTTAATCTCTTTTA
TAGTCAGTATCCTCATTTGTAAACAGAAAAAGAAAATGTATCCTTTGTCT
GGTTTGTGTACCTCAGATGAACACACATGGGTATCTGGAAAACACTTTAC
AATGACTTTTAAGCGTGTATTTGCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_e19.g1 MSMg01no082_e19.g1 CHROMAT_FILE:
MSMg01no082_e19.g1 PHD_FILE: MSMg01no082_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:44 2005
         (528 letters)



>mm_chr10_95778930_95779859
          Length = 930

 Score =  963 bits (498), Expect = 0.0
 Identities = 522/530 (98%), Gaps = 2/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaacagaaatgatgaaatattaatgatcatgattcatataaaattcagtttctcttaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ccaacagaaatgatgaaatattaatgatcatgattcatataaaattcagtttttcttaat 260

                                                                       
Query: 61  aagtcaggcagaaagcagaggtctaggtttaataaccctttagagccaaggagataactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtcaggcagaaagcagaggtctaggtttaataaccctttagagccaaggagataactg 320

                                                                       
Query: 121 gaggctttt-gtgagttagtctactttaaagggctccattttgaagtactgtatgattga 179
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gaggctttttgtgagttagtctactttaaagggctacattttgaagtactgtatgattga 380

                                                                       
Query: 180 cacatacctctttaatatcaataaccatcaaacagtaccaatagagaaatgtgcaggtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatacctctttaatatcaataaccatcaaacagtaccaatagagaaatgtgcaggtgt 440

                                                                       
Query: 240 caagttcaatagtttccacatgcagtttcattagtaagtggaaagtcccaaattggttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagttcaatagtttccacatgcagtttcattagtaagtggaaagtcccaaattggttaa 500

                                                                       
Query: 300 gtgattaaatttctgtcactgccaaatcattgtggggaacaggccatataaccattatta 359
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 501 gtgattaaatttctgtcactgccaaatcattgtggggaacaggtcatataaccatcatta 560

                                                                       
Query: 360 gcatggttttctgggatcagcttttt-ggtgtcttggaaaagcaggattacaaaccagta 418
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 gcatggttttctgggatcagcttttttggtgtcttggaaaagcaggattacaaaccagta 620

                                                                       
Query: 419 gactttgagttgaatattaaaggccaagtatgaccttgcacatatctcttaatctctttt 478
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gactttgtgttgaatattaaaggccaagtatgaccttgcacatatctcttaatctctttt 680

                                                             
Query: 479 atagtcagtatcctcatttgtaaacagaaaaagaaaatgtatcctttgtc 528
           ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagtcagtgtcctcatttgtaaacagaaaaagaaaatgtatcctttgtc 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 930
Length adjustment: 10
Effective length of query: 518
Effective length of database: 920
Effective search space:   476560
Effective search space used:   476560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)