BAC Information

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BAC

Clone NameMSMg01-082K21
Chromosome10 (Build37)
Map Location 71,670,421 - 71,670,585
singlet/doubletsinglet
Overlap genenone
Upstream geneTfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik
Downstream geneLOC100040505, Zwint, LOC432471, LOC544705
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082K21.T7 (MSMg01no082_k21.b1)MSMg01-082K21.TJ (MSMg01no082_k21.g1)
ACCAG302991AG302992
length674679
length of high quality
(start - end)
169 (40 - 208)315 (71 - 385)
definitionCHROMAT_FILE: MSMg01no082_k21.b1 PHD_FILE: MSMg01no082_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:12 2005CHROMAT_FILE: MSMg01no082_k21.g1 PHD_FILE: MSMg01no082_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATTTGCGGCGCTATACGACTCCTATTCCGAGAGCATCCGCGGAATTC
TATCTTATTCCATAAATAATCACTTTCAGGCATCTAGACATGCTCATGTT
GTTAATGAAATGTGAATCCTGATGTCTGATCAGCATCTAAGGGAGCTTTC
ATGGGCCCTGGTGATTTATAGGATCCTTATTGACCTGATTGTTATCTTCA
TGGCCATAGTCAGCAGTTGTACCAGGACAAGAATGAAATGGCTCATTTGC
TACCTAGGTGAATATTGCCAAGAGGCCTTGCTTGAAATTAATACTTTACA
TTATTGTACGGCCAAGGAATACTTTACCATTACATGCAAATACTGGGAAT
ATTATGTTCAATTACCTTTTGACTCTCCAAAATAATACATACCTTACTGA
CAGGTTCAACAACACATCTCAATAAATTATACCTAGGGAAGTTGTAAATC
AAGCATATCCCTCCCATTCCTATTTCTCTTTGATGACGATGATATCTGCC
CGCTCTATTGTCTATGACTATTCACTTTGCAACCCCCATCTTTGATTCCC
CGATTTTGTTGACCCTTTTTCTGATGAATGATTTCCCTTTGTGTCACTAA
TGGTTCTTGCACCCTTGATCGCCTTTGCCCTATGCCTGACTCCACCCATG
ATTCTCCGGCCTGTTTTTCCACAT
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCGGAGGAATCCCGAATGGCTGAGAAG
CACCTGAAAAAATGTTTAGCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAACATCAAAA
ATTCAGGTGACAGCAGATGCTGGTGAGGATGTGAGGAAAGAGGAACACTC
CTCCATTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTG
TTGGTTCCTCAGAAAATTGGACATAGTACTACCAGAAGATCCCACAATAC
CTCTCCTGGGCATATATCCAGATGTTCCAACTGGTCTGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTATTTATAAAAGCCAGAAGCTGGAAAGA
ATCCATATGTCCCTCAACAGAATAATGAGTACAGAAAATGCGGTATATTT
ACATAATGTAGTACTACTCAGCTATTAAAATGAATGAATTTTATGAAATT
CCTATGCCAATGGATGGACCTGGAGGGATTCAACCTGAGTGAGGCAACCC
ATTCATATATGAACTCATATGAAATGTACCTCCTGAAAAAGTGGATATTC
GGCCAAAAATTTATAATACCTCATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_k21.b1 MSMg01no082_k21.b1 CHROMAT_FILE:
MSMg01no082_k21.b1 PHD_FILE: MSMg01no082_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:12 2005
         (169 letters)



>mm_chr10_71670216_71670785
          Length = 570

 Score =  273 bits (141), Expect = 5e-78
 Identities = 159/165 (96%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctatcttattc-cataaataatcactttcaggcatctagacatgctcatgttgtt 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaattctatcttatacagataaataatcactttcaggcatctagacatgctcatgttgtt 311

                                                                       
Query: 65  aatgaaatgtgaatcctgatgtctgatcagcatctaagggagctttcatgggccctggtg 124
           ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 310 aatgaaatgtgaatcctgatgtctgatcaacatctaaaggagctttcatgggccctggtg 251

                                                        
Query: 125 atttataggatccttattgacctgattgttatcttcatggccata 169
           |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 250 atttataggatccttactgacctgattgttatcttcatggccata 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 570
Length adjustment: 8
Effective length of query: 161
Effective length of database: 562
Effective search space:    90482
Effective search space used:    90482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)