BAC Information

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BAC

Clone NameMSMg01-083N20
Chromosome10 (Build37)
Map Location 123,192,853 - 123,193,262
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
Downstream gene4930503E24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N20.T7 (MSMg01no083_n20.b1)MSMg01-083N20.TJ (MSMg01no083_n20.g1)
ACCAG303872AG303873
length721725
length of high quality
(start - end)
282 (69 - 350)409 (72 - 480)
definitionCHROMAT_FILE: MSMg01no083_n20.b1 PHD_FILE: MSMg01no083_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005CHROMAT_FILE: MSMg01no083_n20.g1 PHD_FILE: MSMg01no083_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGATCCGCGGAATT
CCTAAGATCACCAGAGTCACTAATTTGGACCCTGCGGCAACTCCCAGATA
TTGAACCACCAACCAAATAACATACAAGGGCTGGACTTAGGTCCACTCCA
TACCCCCACACACACACATATGTAGCATAAGTGCAGCATGGTCTTCATGT
GAGTCCCCAGCAACAGGAGTGGGGACTTACCTCGACTCTGTTGCCTGCCT
GTGGACCCTGCTCCCCTAACTAGGTATATTGTCTGGCTTCATTGGGAAAG
GATATACCTAGTCCTATAGCAACTTGAGGTGCCAAGATCCATTTTGCAAT
TATAAAACAATATCAAGTGCTTTTTAAATTCTTGCCAAAACAATTCTATG
TGTAAGAGCTTTCCACAATACATGTTGCTTTCACACAGCCAATAATTCAG
ACAAAAACTGATGATATAAAAGATCCTTTGCTTCTCTAGTCCCTGCCAAG
GAGTTGCCACTTGTGTGGATATCAAGAAGAAAAAGGCTTCCTTTGCCAAT
GTCCTCCTGGGTAGAGGCCTGATCTGTCAAATTGCCTCTAATTCTGGTGT
AGTGAATGCCTGCCCACCTGGATGCACCTGACATATAGAACCTAAGCACA
CCATCTGTATCTGAATATACTGAATATGCCAGAAAGTTCTTATATAGATC
TTTTTGAGTTAGCTTTCTACC
ATTGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATTTTTTACAAATCCCTATAATTTTCT
TTGTTGAGTCCTGCTTTATTTTATGTAAAATCCAATTGCCAGTAATACTG
AGCTGGTGTTTTAATTTCTGTTCAAGTCATTTTAATGGGGTTGTTATTCT
CACTAACATTAGAAAATATTCAATAAATGCATGACTCAAAGAAATCTTCT
AAAAGTGACTTTTATTTCATAAAGTGGACTACGGCCATTTCCTAGAGCCT
ATAAAACGTAATAGTACTGCCTAAGAATGGGACTCCATTCATGATAGGAA
GTGACAGCTTGATAAAATTATGTTTTTAATTTAGGGGAAAAAGATCCAAT
GATCTGACCTCTGTATTTATAAATTTCTTATAGCCTTTTTTCTGACATGT
ATTATTACATGGAATAACTGAACTCACCAGATTGTCCAGTTTAAATAGGT
TTTCTAGTATCATTTTTTGATCATTAAGCAATAACAAAACCTCTAAAATA
AAACCTAAAATCTTGAAGATTTTCTAAAATTTATAGTGAACATCTCAGGA
AGTGCTCTATCTACGTACCTATTTTAAGGAATTTCATTCTCATGATAATT
TAAAATGTTATCAAACATTTGAATAATGCTCTATAAAACCGCTTTTAATC
CCACCCCTTGGTAAGTCTAAGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n20.g1 MSMg01no083_n20.g1 CHROMAT_FILE:
MSMg01no083_n20.g1 PHD_FILE: MSMg01no083_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:43 2005
         (409 letters)



>mm_chr10_123192653_123193462
          Length = 810

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%), Gaps = 1/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattttttacaaa-tccctataattttctttgttgagtcctgctttattttatgtaaaa 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattttttacaaaatccctataattttctttgttgagtcctgctttattttatgtaaaa 260

                                                                       
Query: 60  tccaattgccagtaatactgagctggtgttttaatttctgttcaagtcattttaatgggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaattgccagtaatactgagctggtgttttaatttctgttcaagtcattttaatgggg 320

                                                                       
Query: 120 ttgttattctcactaacattagaaaatattcaataaatgcatgactcaaagaaatcttct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgttattctcactaacattagaaaatattcaataaatgcatgactcaaagaaatcttct 380

                                                                       
Query: 180 aaaagtgacttttatttcataaagtggactacggccatttcctagagcctataaaacgta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagtgacttttatttcataaagtggactacggccatttcctagagcctataaaacgta 440

                                                                       
Query: 240 atagtactgcctaagaatgggactccattcatgataggaagtgacagcttgataaaatta 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagtactgcctaagaatgggactccattcatgataggaagtgacagcttgataaaatta 500

                                                                       
Query: 300 tgtttttaatttaggggaaaaagatccaatgatctgacctctgtatttataaatttctta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtttttaatttaggggaaaaagatccaatgatctgacctctgtatttataaatttctta 560

                                                             
Query: 360 tagccttttttctgacatgtattattacatggaataactgaactcaccag 409
           ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtcttttttctgacatgtattattacatggaataactgaactcaccag 610


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 810
Length adjustment: 9
Effective length of query: 400
Effective length of database: 801
Effective search space:   320400
Effective search space used:   320400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)