BAC Information

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BAC

Clone NameMSMg01-084A15
Chromosome10 (Build37)
Map Location 35,374,232 - 35,374,453
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667824
Downstream geneLOC100041585, LOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084A15.T7 (MSMg01no084_a15.b1)MSMg01-084A15.TJ (MSMg01no084_a15.g1)
ACCAG304002AG304003
length758734
length of high quality
(start - end)
---222 (68 - 289)
definitionCHROMAT_FILE: MSMg01no084_a15.b1 PHD_FILE: MSMg01no084_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:57 2005CHROMAT_FILE: MSMg01no084_a15.g1 PHD_FILE: MSMg01no084_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCCCACCTGATTGCTACCGAATAGATGAGAAGCAACTGAAAAAAAAT
GTTTAGCATACCTTAATCATCAGGGAAATGCAAATCAAAACAACACTGAT
ATTCCACCTCACAGCAGTCAGAATGACTAAGATAAAAAATTCAGGAGACA
GCAGATGCTGTCTAGGATGTGTGTAAAGAGGAACACTCCTCCATTGTTGC
TGGAATTGCAAGCTTATATCACCACTCTTGGAAATCAGCCCTGCGGGACC
CTGGCATCTGGCTAGAAATTTGCTCATTGTTTTTTCTGGCGTTCCTGTCT
GTGGTGAGTATACGCCTTTGTATAATCGTCTGGTGTGCACCTTGTTATTT
TCTTCTTGATTTTGTTTGGCGTCCCTTTTCCTCTCCTCGTTCTTGTCGTA
CTTGTATGTTGTTCTCTGATGTTCTCCCCGTGATTCCGGCGAGGAGGCTC
CACCCCTCCCTGCCCCTATTTCCACCGGCTCTACTTCTCTCGTTTGATTC
GCCGCGACCCGCCGCGAGTCGTTCTCTCGCGCCTGGGACTCTTTTCGTTC
TTGGCTGGTCGTCTGTTTTCTCTCTTCTTTCCCTCTCGTATAGGACGCGC
CCAGTCCTCCTCCTCCGGCCGCTACCTCTTCTGGCGTTTCGTGCCCGTCC
ATCTCTTTCCCCGCTTCCCCCGACCTCATCCCTTCCCCGCGTTACGTCAC
GACATATG
AATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCAGATGGAAACTTGGTAAAAAGTCAACTGTA
AGTCAGATGGAGTAGATTTCACCGAAGGCCACACTATTTATGGACTGAAT
GTTCGTTTCAAGGGTGTTTGTGAGGACTTAAGAGAATATCTTGTAAATTT
CCAAGTGACAATGATGCATCACCTCTGACTCTGCTATACCTGTGTTTGTT
TGGTTTTCCAGCTCATCTGTAAGGTACTTTCTCCAGTGTGTGCAGTGTCT
CTGTTATTTTCATCACTTCTTGAGGATGTTTCCTTTGTGCTTCTAGTGTG
ATCCTCTACTATGCTATATGCTCTGTTTATTGCAAATTTAATCATATCAT
GTCTAGTATCATCTGAAAGCACCTTACTAGTCTTTGAATTGGGTTCTGGT
CTCTACTTATACACACTAAGAGTTTTATTTACACCTCCAAACTTTGGCGA
CAGTTCAGTTTTAGACCCTCTATTCAACTGTCCCCCTGCTGTCATTGACA
ATATTTACTGGCCATATACAAAAAAAAGGACCTTCTTACGCCTGCAATCT
AATTTGCTCTCACGATTTATTATCTTCCTATCAATCTTGATTGGCATTCG
CAAACTGCTTCAATGACTTTTTAATCTATTTCTTGCTTACTGCTATTACA
TTTTTTGCTCTATTTTACTATTTACCCCTCACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_a15.g1 MSMg01no084_a15.g1 CHROMAT_FILE:
MSMg01no084_a15.g1 PHD_FILE: MSMg01no084_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:57 2005
         (222 letters)



>mm_chr10_35374032_35374653
          Length = 622

 Score =  406 bits (210), Expect = e-118
 Identities = 219/222 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcagatggaaacttggtaaaaagtcaactgtaagtcagatggagtagatttcaccgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagatggaaacttggtaaaaagtcaactgtaagtcagatggagtagatttcaccgaag 260

                                                                       
Query: 61  gccacactatttatggactgaatgttcgtttcaagggtgtttgtgaggacttaagagaat 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gccacactatttatggactgaatgttcatttcaagggtgtttgtgaggacttaagagaat 320

                                                                       
Query: 121 atcttgtaaatttccaagtgacaatgatgcatcacctctgactctgctatacctgtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcttgtaaatttccaagtgacaatgatgcatcacctctgactctgctatacctgtgttt 380

                                                     
Query: 181 gtttggttttccagctcatctgtaaggtactttctccagtgt 222
           |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 381 gtttggttttccagctcatctgcaagggactttctccagtgt 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 622
Length adjustment: 9
Effective length of query: 213
Effective length of database: 613
Effective search space:   130569
Effective search space used:   130569
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)