BAC Information

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BAC

Clone NameMSMg01-084F18
Chromosome10 (Build37)
Map Location 28,292,456 - 28,293,023
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F18.T7 (MSMg01no084_f18.b1)MSMg01-084F18.TJ (MSMg01no084_f18.g1)
ACCAG304237AG304238
length790711
length of high quality
(start - end)
426 (98 - 523)567 (54 - 620)
definitionCHROMAT_FILE: MSMg01no084_f18.b1 PHD_FILE: MSMg01no084_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005CHROMAT_FILE: MSMg01no084_f18.g1 PHD_FILE: MSMg01no084_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCTTTTTTCTNTTTTCTCTTCTTTTCTTTCTTTTCCCCCCTTTCTTT
CCCACTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTCATCTCTGAGCCCCATTTTTAATGGGGTTATTTGATT
TTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
TTTTGTCTTATTGACAGTGTCTTTTGCCTTGCAGAATCTTTGCAATTTTA
TGAGGTCCCATTTATGGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGCGCTCCTTAA
TCCACTTATATTTGATCTTAACACAAGGAGATAGGAATGGATCAATTCGC
AATCTTCTACATGATAACTGCCAGCTGTGCCAGCACCATTTGTTGAAAAC
ACTGTATTTTTCCCCTGGATGCTTTTAGCTCCCTTGTCAAAGATCAAGCG
ACCATAGGTGTGTGGGTTCATCTCTGGGTCTTTCATTCTGTTCCTTTGGT
CTACTTGTCTGTCACTATTACAGTACCATGCAGTTTTTATTACCATTTGT
TCTGTAGTACAGCTTTTAGCCTGGTCATGGTGATTCCTCCATTAGGTCCT
TTTATCCTGTGAAAAGAGTTTTTTGTTATCCTAAGGCTTC
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATTGAAACAATATTAAATCTCTATGAACAACTTTTGCACACTGAGAA
CCACTAGAATTTCTATTCAAGAAAAAGTGCAGTTTTGAAAACTTTTTCCC
TATATATGTGTGTACTTAAGTCATGTGTGTGTAAATTTCATTTTATCAGC
ACACACAAAATAGTTCCTGCAGATTCCTGAACATGTTACAGAACTAAAAT
ATTACCAAAAAGAATATGACTTAACTTCAGCAGGACTTTGATTTGAGCAC
ACATGCATTGTCCAGCTCTAACATTGGCATGGTCTGCTCCTTTTTACCTT
CCTGTTTTCTGGTTCTAATATGTCTTTGTCCGTTTGTAATGCGGTGCGCT
GTACTTTTGAATGATGCAATAAGAATTCATGTTTTTTTAATAGAATTTTA
CCAAGAGTGAATGATGTAAAACTTATATGAAGGCATAAACATGTTAGTGA
AACTAAACTAAATCTCCAGGGTTATTCTTCAGCAAACAAAATTCAATTAT
ACAAATTCTAATCAGAGCTTTTAAAATACTTAAGCCTGCTGTCTGTTCAC
ACTTCACATAACATAGGTTCGAGAAGTGGACCCTGTGTTCACTACTCAGT
TCTGTATCTTTTTATTATAACCTATACTTGAGAGGGTTTTTTCTTCCCCT
CTTTTATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f18.g1 MSMg01no084_f18.g1 CHROMAT_FILE:
MSMg01no084_f18.g1 PHD_FILE: MSMg01no084_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:22 2005
         (567 letters)



>mm_chr10_28292256_28293223
          Length = 968

 Score = 1021 bits (528), Expect = 0.0
 Identities = 558/568 (98%), Gaps = 1/568 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaaacaatattaaatctctatgaacaacttttgcacactgagaaccactagaatttc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| 
Sbjct: 201 attgaaacaatattaaatctctatgaacaacttttgcacactaagaaccactagaatttt 260

                                                                       
Query: 61  tattcaagaaaaagtgcagttttgaaaactttttccctatatatgtgtgtacttaagtca 120
           | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcaagaaaaagtacagttttgaaaactttttccctatatatgtgtgtacttaagtca 320

                                                                       
Query: 121 tgtgtgtgtaaatttcattttatcagcacacacaaaatagttcctgcagattcctgaaca 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tgtgtgtgtaaatttcattttatcagcacacacaaaatagttcctgcagattcctggaca 380

                                                                       
Query: 181 tgttacagaactaaaatattaccaaaaagaatatgacttaacttcagcaggactttgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttacagaactaaaatattaccaaaaagaatatgacttaacttcagcaggactttgatt 440

                                                                       
Query: 241 tgagcacacatgcattgtccagctctaacattggcatggtctgctcctttttaccttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcacacatgcattgtccagctctaacattggcatggtctgctcctttttaccttcct 500

                                                                       
Query: 301 gttttctggttctaatatgtctttgtccgtttgtaatgcggtgcgctgtacttttgaatg 360
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 501 gttttctggttctaatatgtctttgtccgtttgtaatgcggtgtgttgtacttttgaatg 560

                                                                       
Query: 361 atgcaataagaattcatgttttttt-aatagaattttaccaagagtgaatgatgtaaaac 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcaataagaattcatgttttttttaatagaattttaccaagagtgaatgatgtaaaac 620

                                                                       
Query: 420 ttatatgaaggcataaacatgttagtgaaactaaactaaatctccagggttattcttcag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttatatgaaggcataaacatgttagtgaaactaaactaaatctccagggttattcttcag 680

                                                                       
Query: 480 caaacaaaattcaattatacaaattctaatcagagcttttaaaatacttaagcctgctgt 539
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 caaacaaaattcaattatacaaattctaatcagagcttctaaaatacttaagcctgctgt 740

                                       
Query: 540 ctgttcacacttcacataacataggttc 567
           |||||||||||||||||||| |||||||
Sbjct: 741 ctgttcacacttcacataacgtaggttc 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space:   533606
Effective search space used:   533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)