BAC Information

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BAC

Clone NameMSMg01-084K02
Chromosome10 (Build37)
Map Location 104,855,622 - 104,856,251
singlet/doubletsinglet
Overlap geneTmtc2
Upstream geneLOC100042383
Downstream geneEG627573, BC067068, Ccdc59, EG667758, EG639162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084K02.T7 (MSMg01no084_k02.b1)MSMg01-084K02.TJ (MSMg01no084_k02.g1)
ACCAG304429AG304430
length7041,177
length of high quality
(start - end)		636 (42 - 677)---
definitionCHROMAT_FILE: MSMg01no084_k02.b1 PHD_FILE: MSMg01no084_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:42 2005CHROMAT_FILE: MSMg01no084_k02.g1 PHD_FILE: MSMg01no084_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTGAATCTTTTTGATCCAGCCTCTTCAGTTTGCACAGTCCTTAAGCT
GCTTCTGGTTTTGTTAATTTGTATCTCCCTGGTTTTGCTGCCTTGTGATT
GTTCTTTTTTTTTTTTTTTTGGTTTTTTTCAAGACAGGGTTTCTCTGTGT
AGCCCTGCCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACT
CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCG
CCACCACGCTGGTCTTGATTGTTCTTTTTAAATGTTGACAAAGGCCAGCG
GTGTTATGAAGCTGACGGATGGCGTGTCACAGGTCCCTCACCTGTTGTTG
ACTACAGGTTCCCACTGCTATTTCTCCCACCTGCTGACCTTTCCTGGGGC
AAGCACCCTCACAAGTGGTGCCCATCAGTCCTTCAGAGCAGTATGATGTT
CCAGCCAGCAAAAGTATAATGCTCTGCCACTGCCCTGTTGAAATGTACAG
AAAGGCCAAGCCCTGAAGCAGGGAGAGGAGAAAAACAACAACTTCGAAAT
AGGTTAGAAATCTGTTGTACACGAGAAGAAAAAGAATGCCTTTCCTTAAC
AAACCACATTCCGGCAATATACAAACTGATGTATTTATGCAGAAATAAGG
CAGT

CGCTCCTCTCCTCCTCCCCTTCTCTTCCCCCTCCCTTCTCTCCCTTTCTT
TCTTTTTTCTCTTTTTCTCTCTCTTTTCGTGCCTTTTTTCTTGCCCCTCT
GCTTGTCTTGTCCTTGGCTTGCACGTCGTGCTCGCGCGCTTGTTTTCTCT
ATCTCCACAAACACCCACACTATACATTGGCGGCGTATTTAGATTGTCCC
CCCCTGGCGTCCCCCGGCCCCTTCCGCAGGTCTCCCTTGTTGAACCCCCT
GTTTCTTCCCGCTCAATGCAAATTTTACTTTTAATATTGGCTTTTGTCAA
TATCACACCTTTCAAAATGCGACGCGCCACTTTTGTGTGGTATACTTCTC
CCTCCGCGTTGGTTAGCTCACTCAAACTTTCCTCCGTGTTTTCTCATTGT
AACAAACCATCTCCCTCCTCACGCGCCCTGCTTTTATTAAACGAACCACA
AAAAACGCGCAAAAGTCGCTGTTTCTATTCCAATATTCTGCGGAATAAAT
TGTGGCATAGCGGGTCTTCCTCCCAACAGTCTTTTTCGTCCTCCCTATTT
ATCTGCGCGTGTGGGTGCCCACTATGACCTCTTCCTTTTGTTCTCCCATA
TTTTGTGTGGCAGACTATAATTAGTGCTGTTTTTACAAACGCTCTTTCTT
CATCAACATTGGGGTGCGATTGGGTCGTTCTCTCTTTTCGCACGTCCCTT
TTTGTTCCATAATCTGCGTCTCCCTTCTTTTTTGTTGTGGGAACATATAC
TGGTATTCTCATCTCTTATCTCCTTCGCGCGTTTATTGTTCAATTTTCCC
TCAACTTGTGTGTCCGCCCCTATATTTTTCCCGCCCTTTTTCTTTCCCCC
CTTTTTGTGGTCCGCCGCCGTCTTCCTTATCTCACCCCCGTGATTGCGCG
GTTGTGTACTCACCATAATTGTCTTTCACAACAACAAGTTAGACTATTTT
CTCCACCTCACCACCCGCCCGCGCGTATATTATTATTATCACCCTCCGCG
GCCCGTTGTCGTCACACCGCTGTGTGTATCTTGTAAGGCGCTGTTTCATA
TCTTTGTACCCCCCTTGTTGTGTGTTATCACTCACTCTCTTTATCTTTAC
AACAACTCCGCCGCCTCTCTTTCTAGTCTCTTTGAGATCACCCGTATCAA
TAGATATTATATCGCCCTTCTACTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_k02.b1 MSMg01no084_k02.b1 CHROMAT_FILE:
MSMg01no084_k02.b1 PHD_FILE: MSMg01no084_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:42 2005
         (636 letters)



>mm_chr10_104855418_104856453
          Length = 1036

 Score = 1058 bits (547), Expect = 0.0
 Identities = 611/635 (96%), Gaps = 8/635 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgaatctttttgatccagcctcttcagtttgcacagtccttaagctgcttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgaatctttttgatccagcctcttcagtttgcacagtccttaagctgcttc 264

                                                                       
Query: 65  tggttttgttaatttgtatctccctggttttgctgccttgtgattgttcttttttttttt 124
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 265 tggttttgttaatttgtatctctctggttttgctgccttgtgattgttc-tttttttttt 323

                                                                       
Query: 125 tttttggtttttttcaagacagggtttctctgtgtagccctgcctatcctggaactcact 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttgg-ttttttcaagacagggtttctctgtgtagccctgcctatcctggaactcact 382

                                                                       
Query: 185 ttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccaagtgctgg 244
           |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct: 383 ttgtagaccaggctggcctcgaactcagaaatctgcctgcctcttcctcccgagtgctgg 442

                                                                       
Query: 245 gattaaaggcgtgcgccaccacgctggtcttgattgttctttttaaatgttgacaaaggc 304
           ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 443 gattaaaggtgtgtgccaccacgctggacttgattgttctttttaaatgttgacaaaggc 502

                                                                       
Query: 305 cagcggtgttatgaagctgacggatggcgtgtcacaggtccctcacctgttgttgactac 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cggcggtgttatgaagctgacggatggcgtgtcacaggtccctcacctgttgttgactac 562

                                                                       
Query: 365 aggttcccactgctatttctcccacctgctgacctttcctggggcaagcaccctcacaag 424
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agattcccactgctatttctcccacctgctgacctttcctggggcaagcaccctcacaag 622

                                                                       
Query: 425 tggtgcccatcagtccttcagagcagtatgatgttccagccagcaaaagtataatgctct 484
           |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||
Sbjct: 623 tggtgcccattagtccttcagagcagtatgatgctccagccagcaaaagtagaatgttct 682

                                                                       
Query: 485 gccactgccctgttgaaatgtacagaaaggccaagccctgaagcagggagaggagaaaaa 544
           ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct: 683 gccactgccctgttgaaatgttcggaaaggccaagccccgaagcagggagaggagaaaaa 742

                                                                       
Query: 545 caacaacttcga---aataggttagaaatctgttgtacacgagaagaaaaagaatgcctt 601
           ||||   |||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 caac---ttcgacgaaataggttagaaatctgttgtacacgagaagaaaaagaatgcctt 799

                                              
Query: 602 tccttaacaaaccacattccggcaatatacaaact 636
           |||||||||||||||||||||||||||||||||||
Sbjct: 800 tccttaacaaaccacattccggcaatatacaaact 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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