BAC Information

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BAC

Clone NameMSMg01-084N17
Chromosome10 (Build37)
Map Location 68,270,457 - 68,270,870
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
Downstream geneA930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N17.T7 (MSMg01no084_n17.b1)MSMg01-084N17.TJ (MSMg01no084_n17.g1)
ACCAG304596AG304597
length718712
length of high quality
(start - end)
562 (37 - 598)416 (66 - 481)
definitionCHROMAT_FILE: MSMg01no084_n17.b1 PHD_FILE: MSMg01no084_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:00 2005CHROMAT_FILE: MSMg01no084_n17.g1 PHD_FILE: MSMg01no084_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGG
CCCATACCCAAACATAATAAAAGCAATCTACAGCAAACCAGTAGCCAACA
TCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATCAGGGACT
AGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTGAAGT
ATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATTG
GAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATAT
ATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACAG
CTTTGGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCT
TTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACA
CCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCTAAC
TAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAG
AAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATT
GGCAGGATCAACATTGTAAAAATGGCTATCTTGCCCAAAGCAATCTACAG
ATTCTATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAAATAG
AAGGAGCAATTTGCAAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCTGTAGTATTGTCTCACCATTGCGTGTTGTCTC
ATGGAATTTATGCCTTATTGTTTAGTGACCACTTTTTTTTAAGGCCTACT
TCCTTTAGGTACAATAATGTGGAGTTGTGTTCAGTGATTCTTAGTCTTCT
TGTATATGAATTAGTCATTAATGTAAGACCGTGAATCAGGCAGAGGGGAT
TCGTCTCTGACCATCGCTTAGCTTTTGACTTTTGGTTTGGCTCGGTTTTT
TGGTTTTAACCATAATTTGTCCTGGTAAGGCTTATATCAATGTTTGAATA
CCCAATATATTTTGTCTCTTATCTCTATGATATAGGTATTATTTATAAGG
GCCTAGCGCACAATTTCTGCAGTATTTCTGCTGAATTTGACAATCGGTTA
CCATTTCATTGAAAACTTATGAATATATATATATTCTTTTACTCCTAATC
CTGGTTGGAAGTTTGTTAATTCTCCAAATAAAGCAGTAGCTAATATCACT
TTGGCAACTGAACAAAAAATTGTTTGCTCACTATGAGACAAACTGGAATA
AAAATAAGGAGTCGCTACTGCAATTCCCAACCCTACAGCTGGGGAAAGTC
AGTCTTGGAATGATATCCAAGACCCTCCAGCTGTCTGCCAAAAGGGATTT
GCTGGTTAATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n17.g1 MSMg01no084_n17.g1 CHROMAT_FILE:
MSMg01no084_n17.g1 PHD_FILE: MSMg01no084_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:00 2005
         (416 letters)



>mm_chr10_68270254_68271070
          Length = 817

 Score =  716 bits (370), Expect = 0.0
 Identities = 403/414 (97%), Gaps = 1/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   tgtagtattgtctcaccattgcgtgttgtctcatggaatttatgccttattgtttagtga 63
           |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgtagtgttgtctcaccattgtgtgttgtctcatggaatttatgccttattgtttagtga 558

                                                                       
Query: 64  ccacttttttt-taaggcctacttcctttaggtacaataatgtggagttgtgttcagtga 122
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcactttttttgtaaggcctacttcctttaggtacaataatgtggagttgtgttcagtga 498

                                                                       
Query: 123 ttcttagtcttcttgtatatgaattagtcattaatgtaagaccgtgaatcaggcagaggg 182
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 497 ttcttagtcttcttgtatatgaattagtcgttaatgtaagaccgtgaatcaggcagaggg 438

                                                                       
Query: 183 gattcgtctctgaccatcgcttagcttttgacttttggtttggctcggttttttggtttt 242
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 437 gattcgtttctgaccatcgcttagcttttgacttttggtttggttcggttttttggtttt 378

                                                                       
Query: 243 aaccataatttgtcctggtaaggcttatatcaatgtttgaatacccaatatattttgtct 302
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaccataatttgtcctggcaaggcttatatcaatgtttgaatacccaatatattttgtct 318

                                                                       
Query: 303 cttatctctatgatataggtattatttataagggcctagcgcacaatttctgcagtattt 362
           ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 317 cttatctctatgatataggtattatttataagggcctagtgtaaaatttctgcagtattt 258

                                                                 
Query: 363 ctgctgaatttgacaatcggttaccatttcattgaaaacttatgaatatatata 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgctgaatttgacaatcggttaccatttcattgaaaacttatgaatatatata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 817
Length adjustment: 9
Effective length of query: 407
Effective length of database: 808
Effective search space:   328856
Effective search space used:   328856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)